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ASM2419823v1

Organism name:
Myxococcus dinghuensis (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: K15C18031901
BioSample:
SAMN24450931
BioProject:
PRJNA792696
Submitter:
Guangdong Institute of Microbiology
Date:
2022/07/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_024198235.1 (latest)
RefSeq assembly accession:
GCF_024198235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAKCFB01
Assembly method:
SPAdes v. v3.11.1
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 13240301 [UID] 34596848 [GenBank] 34597348 [RefSeq]

See Genome Information for Myxococcus dinghuensis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/05/2022 12:03:33
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::8,560
CDSs (total)::8,472
Genes (coding)::8,348
CDSs (with protein)::8,348
Genes (RNA)::88
rRNAs::1, 2, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::80
ncRNAs::4
Pseudo Genes (total)::124
CDSs (without protein)::124
Pseudo Genes (ambiguous residues)::0 of 124
Pseudo Genes (frameshifted)::12 of 124
Pseudo Genes (incomplete)::116 of 124
Pseudo Genes (internal stop)::4 of 124
Pseudo Genes (multiple problems)::7 of 124
CRISPR Arrays::8
##Genome-Annotation-Data-END##

Global statistics

Total sequence length10,408,129
Total ungapped length10,408,129
Number of contigs124
Contig N50207,354
Contig L5015
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)124

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced10,408,12912410,408,129207,35400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Myxococcus dinghuensisMyxococcus dinghuensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024198215.1Myxococcus qinghaiensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.6558.9953.31

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected