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Source database (GenBank or RefSeq) File type

carGib1.2-hapl.c

Organism name:

Carassius gibelio (silver crucian carp)

Infraspecific name:

Ecotype: wild population from Czech Republic

Isolate:

Cgi1373

Sex:

female

BioSample:

SAMN23046545

BioProject:

PRJNA780760

Submitter:

IGB Leibniz-Institute of Freshwater Ecology and Inland Fisheries

Date:

2022/06/16

Assembly type:

haploid (haplotype 3)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_023724105.1 (latest)

RefSeq assembly accession:

GCF_023724105.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)

Data displayed for RefSeq version

WGS Project:

JAJQLC01

Assembly method:

hifiasm unitigger v. 0.15.1-r329; 3D-dna v. 180922

Expected final version:

yes

Genome coverage:

45.0x

Sequencing technology:

PacBio HiFi; OmniC Illumina reads

Linked assemblies:

GCA_023724075.1 (haplotype 1)

GCA_023724085.1 (haplotype 2)

IDs: 12982861 [UID] 33920618 [GenBank] 37758368 [RefSeq]

See Genome Information for Carassius gibelio

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_023724105.1	≠	GCF_023724105.1	carGib1.2-hapl.c	Chromosome	Latest GenBank, Latest RefSeq

Comment

This assembly is one haplotype of three that represent the triploid organism Carassius gibelio (silver crucian carp). For this triploid organism, Haplotypes 1, 2, and 3 represent Haplotypes a, b, and c respectively.

Global statistics

Total sequence length	1,583,351,535
Total ungapped length	1,582,055,447
Gaps between scaffolds	0
Number of scaffolds	51
Scaffold N50	30,677,984
Scaffold L50	22
Number of contigs	2,648
Contig N50	5,134,100
Contig L50	91
Total number of chromosomes and plasmids	51
Number of component sequences (WGS or clone)	51

Molecule name	GenBank sequence		RefSeq sequence
Chromosome A1	CM043215.1	=	NC_068371.1
Chromosome A2	CM043217.1	=	NC_068372.1
Chromosome A3	CM043219.1	=	NC_068373.1
Chromosome A4	CM043221.1	=	NC_068374.1
Chromosome A5	CM043223.1	=	NC_068375.1
Chromosome A6	CM043225.1	=	NC_068376.1
Chromosome A7	CM043227.1	=	NC_068377.1
Chromosome A8	CM043229.1	=	NC_068378.1
Chromosome A9	CM043231.1	=	NC_068379.1
Chromosome A10	CM043233.1	=	NC_068380.1
Chromosome A11	CM043235.1	=	NC_068381.1
Chromosome A12	CM043237.1	=	NC_068382.1
Chromosome A13	CM043239.1	=	NC_068383.1
Chromosome A14	CM043241.1	=	NC_068384.1
Chromosome A15	CM043243.1	=	NC_068385.1
Chromosome A16	CM043245.1	=	NC_068386.1
Chromosome A17	CM043247.1	=	NC_068387.1
Chromosome A18	CM043249.1	=	NC_068388.1
Chromosome A19	CM043251.1	=	NC_068389.1
Chromosome A20	CM043253.1	=	NC_068390.1
Chromosome A21	CM043255.1	=	NC_068391.1
Chromosome A22	CM043257.1	=	NC_068392.1
Chromosome A23	CM043259.1	=	NC_068393.1
Chromosome A24	CM043261.1	=	NC_068394.1
Chromosome A25	CM043263.1	=	NC_068395.1
Chromosome B1	CM043216.1	=	NC_068396.1
Chromosome B2	CM043218.1	=	NC_068397.1
Chromosome B3	CM043220.1	=	NC_068398.1
Chromosome B4	CM043222.1	=	NC_068399.1
Chromosome B5	CM043224.1	=	NC_068400.1
Chromosome B6	CM043226.1	=	NC_068401.1
Chromosome B7	CM043228.1	=	NC_068402.1
Chromosome B8	CM043230.1	=	NC_068403.1
Chromosome B9	CM043232.1	=	NC_068404.1
Chromosome B10	CM043234.1	=	NC_068405.1
Chromosome B11	CM043236.1	=	NC_068406.1
Chromosome B12	CM043238.1	=	NC_068407.1
Chromosome B13	CM043240.1	=	NC_068408.1
Chromosome B14	CM043242.1	=	NC_068409.1
Chromosome B15	CM043244.1	=	NC_068410.1
Chromosome B16	CM043246.1	=	NC_068411.1
Chromosome B17	CM043248.1	=	NC_068412.1
Chromosome B18	CM043250.1	=	NC_068413.1
Chromosome B19	CM043252.1	=	NC_068414.1
Chromosome B20	CM043254.1	=	NC_068415.1
Chromosome B21	CM043256.1	=	NC_068416.1
Chromosome B22	CM043258.1	=	NC_068417.1
Chromosome B23	CM043260.1	=	NC_068418.1
Chromosome B24	CM043262.1	=	NC_068419.1
Chromosome B25	CM043264.1	=	NC_068420.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,583,334,954	50	1,582,038,866	30,677,984	2,597
Chromosome A1	39,279,431	1	39,254,931	39,279,431	49
Chromosome A2	31,625,495	1	31,601,995	31,625,495	47
Chromosome A3	34,136,370	1	34,114,290	34,136,370	45
Chromosome A4	36,646,276	1	36,614,776	36,646,276	63
Chromosome A5	39,969,342	1	39,940,342	39,969,342	58
Chromosome A6	31,924,567	1	31,904,567	31,924,567	40
Chromosome A7	42,706,565	1	42,694,565	42,706,565	24
Chromosome A8	28,723,537	1	28,699,949	28,723,537	48
Chromosome A9	31,188,138	1	31,178,138	31,188,138	20
Chromosome A10	27,399,512	1	27,362,512	27,399,512	74
Chromosome A11	26,914,836	1	26,882,176	26,914,836	67
Chromosome A12	25,917,584	1	25,905,084	25,917,584	25
Chromosome A13	29,821,524	1	29,802,024	29,821,524	39
Chromosome A14	25,976,202	1	25,952,702	25,976,202	47
Chromosome A15	26,532,932	1	26,501,432	26,532,932	63
Chromosome A16	31,776,151	1	31,750,651	31,776,151	51
Chromosome A17	27,423,072	1	27,414,572	27,423,072	17
Chromosome A18	30,677,984	1	30,642,984	30,677,984	70
Chromosome A19	30,891,682	1	30,883,182	30,891,682	17
Chromosome A20	28,956,650	1	28,929,150	28,956,650	55
Chromosome A21	25,507,417	1	25,471,917	25,507,417	71
Chromosome A22	26,217,247	1	26,194,247	26,217,247	46
Chromosome A23	26,107,217	1	26,092,717	26,107,217	29
Chromosome A24	25,190,352	1	25,160,352	25,190,352	60
Chromosome A25	20,556,341	1	20,536,341	20,556,341	40
Chromosome B1	37,136,340	1	37,115,340	37,136,340	42
Chromosome B2	32,334,160	1	32,316,660	32,334,160	35
Chromosome B3	55,340,887	1	55,312,887	55,340,887	56
Chromosome B4	28,347,954	1	28,335,954	28,347,954	24
Chromosome B5	43,513,016	1	43,441,516	43,513,016	143
Chromosome B6	30,194,014	1	30,176,514	30,194,014	35
Chromosome B7	42,201,968	1	42,162,968	42,201,968	78
Chromosome B8	31,783,460	1	31,760,460	31,783,460	46
Chromosome B9	33,116,744	1	33,110,244	33,116,744	13
Chromosome B10	26,665,912	1	26,641,412	26,665,912	49
Chromosome B11	26,335,503	1	26,317,417	26,335,503	36
Chromosome B12	27,298,517	1	27,280,517	27,298,517	36
Chromosome B13	30,443,710	1	30,425,121	30,443,710	38
Chromosome B14	29,474,200	1	29,457,615	29,474,200	34
Chromosome B15	29,401,530	1	29,370,030	29,401,530	63
Chromosome B16	32,370,375	1	32,346,875	32,370,375	47
Chromosome B17	29,402,442	1	29,389,442	29,402,442	26
Chromosome B18	32,265,897	1	32,222,897	32,265,897	86
Chromosome B19	37,456,279	1	37,410,279	37,456,279	92
Chromosome B20	29,114,643	1	29,099,643	29,114,643	30
Chromosome B21	29,479,074	1	29,457,574	29,479,074	43
Chromosome B22	55,532,955	1	55,453,955	55,532,955	158
Chromosome B23	29,651,998	1	29,610,498	29,651,998	83
Chromosome B24	25,582,522	1	25,548,022	25,582,522	69
Chromosome B25	26,824,430	1	26,789,430	26,824,430	70

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carGib1.2-hapl.c

See Genome Information for Carassius gibelio

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear