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ASM2363803v1

Organism name:
Natronocalculus amylovorans (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: AArc-St2
BioSample:
SAMN25827067
BioProject:
PRJNA807102
Submitter:
Research Center of Biotechnology RAS
Date:
2022/06/02
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_023638035.1 (latest)
RefSeq assembly accession:
GCF_023638035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAKRVX01
Assembly method:
SPAdes v. 3.15.2; Unicycler v. 0.4.9
Expected final version:
yes
Genome coverage:
485.0x
Sequencing technology:
Illumina MiSeq

IDs: 12911431 [UID] 33723778 [GenBank] 33738318 [RefSeq]

See Genome Information for Natronocalculus amylovorans

History (Show revision history)

Comment

Bacteria and source DNA available from Dr. D.Y. Sorokin (Laboratory of Ecology and Geochemical Activity of Microorganisms, Research Center of Biotechnology RAS)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found ... here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::02/16/2022 10:55:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,331
CDSs (total)::3,283
Genes (coding)::3,246
CDSs (with protein)::3,246
Genes (RNA)::48
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::43
ncRNAs::2
Pseudo Genes (total)::37
CDSs (without protein)::37
Pseudo Genes (ambiguous residues)::0 of 37
Pseudo Genes (frameshifted)::10 of 37
Pseudo Genes (incomplete)::29 of 37
Pseudo Genes (internal stop)::7 of 37
Pseudo Genes (multiple problems)::9 of 37
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,260,636
Total ungapped length3,260,636
Number of contigs20
Contig N50508,906
Contig L503
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)20

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023638225.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Plasmid pAArc-St2JAKRVX010000010.1=NZ_JAKRVX010000010.10
unplacedn/an/an/a19

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
All3,260,636203,260,636508,90600
Plasmid pAArc-St283,923183,92383,92300
unplaced3,176,713193,176,713508,90600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Natronocalculus amylovoransNatronocalculus amylovorans

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024494645.1Halohasta litoreatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.990.970.83

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected