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bFalPer1.pri

Organism name:
Falco peregrinus (peregrine falcon)
Isolate:
bFalPer1
Sex:
female
BioSample:
SAMN28688290
BioProject:
PRJNA842834
Submitter:
Vertebrate Genomes Project
Date:
2022/06/02
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_023634155.1 (latest)
RefSeq assembly accession:
GCF_023634155.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT
  • Data displayed for RefSeq version
WGS Project:
JAMOAR01
Assembly method:
Hifiasm v. 0.13.0; purge_dups v. 1.2.3; bionano solve v. 3.6.1; salsa2 v. 2.2; VGP pipeline v. 2.0; gEVAL v. curation
Expected final version:
no
Genome coverage:
28x
Sequencing technology:
PacBio Sequel II HiFi; Arima Genomics Hi-C; Bionano Genomics DLS
Linked assembly:
GCA_023634185.1 (alternate pseudohaplotype of diploid)

IDs: 12913631 [UID] 33729978 [GenBank] 42310148 [RefSeq]

See Genome Information for Falco peregrinus

Pathogen Detection Resources

There are 9 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,311,598,859
Total ungapped length1,307,584,474
Gaps between scaffolds0
Number of scaffolds125
Scaffold N5093,682,670
Scaffold L506
Number of contigs357
Contig N5015,744,644
Contig L5024
Total number of chromosomes and plasmids24
Number of component sequences (WGS or clone)125

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_023634175.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM042629.1=NC_073721.10
Chromosome 2CM042630.1=NC_073722.10
Chromosome 3CM042631.1=NC_073723.10
Chromosome 4CM042632.1=NC_073724.10
Chromosome 5CM042633.1=NC_073725.10
Chromosome 6CM042634.1=NC_073726.10
Chromosome 7CM042635.1=NC_073727.10
Chromosome 8CM042636.1=NC_073728.10
Chromosome 9CM042637.1=NC_073729.10
Chromosome 10CM042638.1=NC_073730.10
Chromosome 11CM042639.1=NC_073731.10
Chromosome 12CM042640.1=NC_073732.110
Chromosome 13CM042641.1=NC_073733.10
Chromosome 14CM042642.1=NC_073734.10
Chromosome 15CM042643.1=NC_073735.10
Chromosome 16CM042644.1=NC_073736.10
Chromosome 17CM042645.1=NC_073737.10
Chromosome 18CM042646.1=NC_073738.10
Chromosome ZCM042648.1=NC_073739.10
Chromosome 19CM042647.1=NC_073740.10
Chromosome 20CM042649.1=NC_073741.10
Chromosome 21CM042650.1=NC_073742.12
Chromosome WCM042651.1=NC_073743.12
unplacedn/an/an/a87

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,311,580,7911241,307,566,40693,682,6702320
Chromosome 1Assembled molecule130,779,3821130,763,154130,779,382100
Chromosome 2Assembled molecule127,338,0731127,327,587127,338,07370
Chromosome 3Assembled molecule122,593,9611122,574,811122,593,961160
Chromosome 4Assembled molecule122,908,6101122,886,529122,908,610100
Chromosome 5Assembled molecule115,608,6001115,538,557115,608,600170
Chromosome 6Assembled molecule93,682,670193,674,73393,682,67080
Chromosome 7Assembled molecule91,726,840191,713,21891,726,84040
Chromosome 8Assembled molecule66,045,543166,040,33866,045,54330
Chromosome 9Assembled molecule38,951,723138,944,24538,951,72310
Chromosome 10Assembled molecule35,994,187135,992,32435,994,18720
Chromosome 11Assembled molecule33,792,736133,792,53633,792,73610
Chromosome 12AllAssembled moleculeUnlocalized scaffolds31,122,46230,104,9981,017,4641111031,108,31330,092,0491,016,26430,104,99830,104,998576,012523000
Chromosome 13Assembled molecule24,892,936124,889,13024,892,93670
Chromosome 14Assembled molecule25,939,749125,939,60125,939,74930
Chromosome 15Assembled molecule8,257,08918,257,0898,257,08900
Chromosome 16Assembled molecule9,868,96719,867,7609,868,96720
Chromosome 17Assembled molecule6,305,19516,121,4236,305,19590
Chromosome 18Assembled molecule6,862,36316,818,1966,862,363100
Chromosome ZAssembled molecule85,812,713184,347,88685,812,713370
Chromosome 19Assembled molecule6,533,25516,473,4246,533,255260
Chromosome 20Assembled molecule293,3151292,115293,31530
Chromosome 21AllAssembled moleculeUnlocalized scaffolds2,705,9472,584,254121,6933122,705,4472,583,754121,6932,584,2542,584,25465,391110000
Chromosome WAllAssembled moleculeUnlocalized scaffolds30,195,75430,090,816104,93831228,866,33028,761,892104,43830,090,81630,090,81663,99932311000
unplacedAssembled molecule93,368,7218792,631,6602,384,313180
MoleculeTotal
Length
Mitochondrion MT18,068