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Source database (GenBank or RefSeq) File type

Takin1.1

Organism name:

Budorcas taxicolor (takin)

Isolate:

Tak-1

Sex:

male

BioSample:

SAMN22814979

BioProject:

PRJNA776710

Submitter:

Northwest A&F University

Date:

2022/04/22

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_023091745.2 (latest)

RefSeq assembly accession:

GCF_023091745.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JAKGDW01

Assembly method:

hifiasm v. 0.13

Expected final version:

yes

Genome coverage:

24.0x

Sequencing technology:

PacBio Sequel; Illumina NovaSeq

IDs: 14624681 [UID] 37900888 [GenBank] 38125568 [RefSeq]

See Genome Information for Budorcas taxicolor

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_023091745.2	≠	GCF_023091745.1	Takin1.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_023091745.1	n/a	n/a	Takin1.0	Chromosome	Replaced GenBank

Comment

In December 2022 3147 sequences were suppressed because they were found to be contaminants.

Global statistics

Total sequence length	2,851,654,952
Total ungapped length	2,851,579,369
Gaps between scaffolds	0
Number of scaffolds	1,363
Scaffold N50	109,747,698
Scaffold L50	10
Number of contigs	1,515
Contig N50	68,053,581
Contig L50	15
Total number of chromosomes and plasmids	28
Number of component sequences (WGS or clone)	1,363

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM041229.1	=	NC_068910.1	0
Chromosome 2	CM041230.1	=	NC_068911.1	0
Chromosome 3	CM041231.1	=	NC_068912.1	0
Chromosome 4	CM041232.1	=	NC_068913.1	0
Chromosome 5	CM041233.1	=	NC_068914.1	0
Chromosome 6	CM041234.1	=	NC_068915.1	0
Chromosome 7	CM041235.1	=	NC_068916.1	0
Chromosome 8	CM041236.1	=	NC_068917.1	0
Chromosome 9	CM041237.1	=	NC_068918.1	0
Chromosome 10	CM041238.1	=	NC_068919.1	0
Chromosome 11	CM041239.1	=	NC_068920.1	0
Chromosome 12	CM041240.1	=	NC_068921.1	0
Chromosome 13	CM041241.1	=	NC_068922.1	0
Chromosome 14	CM041242.1	=	NC_068923.1	0
Chromosome 15	CM041243.1	=	NC_068924.1	0
Chromosome 16	CM041244.1	=	NC_068925.1	0
Chromosome 17	CM041245.1	=	NC_068926.1	0
Chromosome 18	CM041246.1	=	NC_068927.1	0
Chromosome 19	CM041247.1	=	NC_068928.1	0
Chromosome 20	CM041248.1	=	NC_068929.1	0
Chromosome 21	CM041249.1	=	NC_068930.1	0
Chromosome 22	CM041250.1	=	NC_068931.1	0
Chromosome 23	CM041251.1	=	NC_068932.1	0
Chromosome 24	CM041252.1	=	NC_068933.1	0
Chromosome 25	CM041253.1	=	NC_068934.1	0
Chromosome X	CM041254.1	=	NC_068935.1	0
Chromosome Y	CM041255.1	=	NC_068936.1	0
unplaced	n/a	n/a	n/a	1,335

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,851,638,285	1,362	2,851,562,702	109,747,698	152
Chromosome 1	221,681,955	1	221,675,455	221,681,955	13
Chromosome 2	180,790,560	1	180,786,560	180,790,560	8
Chromosome 3	121,257,437	1	121,255,437	121,257,437	4
Chromosome 4	121,893,413	1	121,892,913	121,893,413	1
Chromosome 5	164,229,985	1	164,228,485	164,229,985	3
Chromosome 6	117,470,585	1	117,470,585	117,470,585	0
Chromosome 7	109,747,698	1	109,743,198	109,747,698	9
Chromosome 8	116,332,870	1	116,331,370	116,332,870	3
Chromosome 9	95,261,157	1	95,260,157	95,261,157	2
Chromosome 10	101,265,939	1	101,265,939	101,265,939	0
Chromosome 11	166,101,779	1	166,085,279	166,101,779	33
Chromosome 12	87,320,261	1	87,316,261	87,320,261	8
Chromosome 13	83,386,884	1	83,386,384	83,386,884	1
Chromosome 14	95,195,309	1	95,193,809	95,195,309	3
Chromosome 15	81,884,251	1	81,883,751	81,884,251	1
Chromosome 16	81,846,430	1	81,845,930	81,846,430	1
Chromosome 17	73,125,108	1	73,125,108	73,125,108	0
Chromosome 18	68,053,581	1	68,053,581	68,053,581	0
Chromosome 19	62,609,204	1	62,608,704	62,609,204	1
Chromosome 20	74,796,239	1	74,795,739	74,796,239	1
Chromosome 21	74,367,286	1	74,364,286	74,367,286	6
Chromosome 22	62,626,290	1	62,625,790	62,626,290	1
Chromosome 23	51,314,163	1	51,313,663	51,314,163	1
Chromosome 24	44,902,965	1	44,902,965	44,902,965	0
Chromosome 25	52,021,096	1	52,020,096	52,021,096	2
Chromosome X	146,747,936	1	146,726,853	146,747,936	43
Chromosome Y	11,293,021	1	11,289,521	11,293,021	7
unplaced	184,114,883	1,335	184,114,883	384,071	0

Assembly

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Takin1.1

See Genome Information for Budorcas taxicolor

Pathogen Detection Resources

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear