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ASM2302834v1

Organism name:
Halorientalis marina (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: GDY88
BioSample:
SAMN27190925
BioProject:
PRJNA822520
Submitter:
Jiangsu University
Date:
2022/04/18
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_023028345.1 (latest)
RefSeq assembly accession:
GCF_023028345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 4
Expected final version:
no
Genome coverage:
314.0x
Sequencing technology:
PacBio Sequel

IDs: 12546771 [UID] 32827478 [GenBank] 32897778 [RefSeq]

See Genome Information for Halorientalis marina

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::09/01/2023 16:15:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,833
CDSs (total)::4,775
Genes (coding)::4,686
CDSs (with protein)::4,686
Genes (RNA)::58
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::53
ncRNAs::2
Pseudo Genes (total)::89
CDSs (without protein)::89
Pseudo Genes (ambiguous residues)::0 of 89
Pseudo Genes (frameshifted)::35 of 89
Pseudo Genes (incomplete)::65 of 89
Pseudo Genes (internal stop)::25 of 89
Pseudo Genes (multiple problems)::29 of 89
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,754,137
Total ungapped length4,754,137
Total number of chromosomes and plasmids4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_023028355.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP095487.1=NZ_CP095487.1
Plasmid unnamed1CP095488.1=NZ_CP095488.1
Plasmid unnamed2CP095489.1=NZ_CP095489.1
Plasmid unnamed3CP095490.1=NZ_CP095490.1

Assembly statistics

MoleculeTotal
Length
All4,754,137
Chromosome 3,675,221
Plasmid unnamed1420,925
Plasmid unnamed299,424
Plasmid unnamed3558,567

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halorientalis marinaHalorientalis marina

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_023028225.1Halorientalis litoreatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.0113.2619.61

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected