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ASM2118404v1

Organism name:
Methanococcoides orientis (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: LMO-1
BioSample:
SAMN18869927
BioProject:
PRJNA718391
Submitter:
Shanghai Jiao Tong University
Date:
2021/12/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_021184045.1 (latest)
RefSeq assembly accession:
GCF_021184045.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
flye v. 2.7
Expected final version:
yes
Genome coverage:
412.0x
Sequencing technology:
Oxford Nanopore PromethION; MGISEQ-2000

IDs: 11622961 [UID] 30587238 [GenBank] 30749618 [RefSeq]

See Genome Information for Methanococcoides orientis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::09/20/2023 07:02:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,442
CDSs (total)::2,361
Genes (coding)::2,339
CDSs (with protein)::2,339
Genes (RNA)::81
rRNAs::9, 5, 5 (5S, 16S, 23S)
complete rRNAs::9, 5, 5 (5S, 16S, 23S)
tRNAs::60
ncRNAs::2
Pseudo Genes (total)::22
CDSs (without protein)::22
Pseudo Genes (ambiguous residues)::0 of 22
Pseudo Genes (frameshifted)::2 of 22
Pseudo Genes (incomplete)::13 of 22
Pseudo Genes (internal stop)::9 of 22
Pseudo Genes (multiple problems)::2 of 22
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,494,162
Total ungapped length2,494,162
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_021184055.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP073710.1=NZ_CP073710.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,494,162

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Methanococcoides orientisMethanococcoides orientis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000765475.1Methanococcoides methylutenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.7982.4481.97

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected