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Source database (GenBank or RefSeq) File type

ASM2068755v1

Organism name:: Bacteroides hominis (ex Afrizal et al. 2022) (CFB group bacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: CLA-AA-H207
BioSample:: SAMN22081874
BioProject:: PRJNA767532
Submitter:: RWTH Aachen University Hospital
Date:: 2021/10/31
Assembly type:: na
Assembly level:: Contig
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_020687555.1 (latest)
RefSeq assembly accession:: GCF_020687555.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAJEQV01
Assembly method:: SPAdes v. 3.13.1
Expected final version:: yes
Genome coverage:: 48x
Sequencing technology:: Illumina NextSeq

IDs: 11351291 [UID] 29890658 [GenBank] 29927118 [RefSeq]

See Genome Information for Bacteroides hominis (ex Afrizal et al. 2022)

Pathogen Detection Resources

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_020687555.1	=	GCF_020687555.1	ASM2068755v1	Contig	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::10/26/2021 11:10:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,337
CDSs (total)::4,275
Genes (coding)::4,210
CDSs (with protein)::4,210
Genes (RNA)::62
rRNAs::1, 1 (16S, 23S)
partial rRNAs::1, 1 (16S, 23S)
tRNAs::58
ncRNAs::2
Pseudo Genes (total)::65
CDSs (without protein)::65
Pseudo Genes (ambiguous residues)::0 of 65
Pseudo Genes (frameshifted)::24 of 65
Pseudo Genes (incomplete)::39 of 65
Pseudo Genes (internal stop)::18 of 65
Pseudo Genes (multiple problems)::13 of 65
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,183,745
Total ungapped length	5,183,745
Number of contigs	79
Contig N50	134,411
Contig L50	14
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	79

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	98.45	82.00	83.36

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ASM2068755v1

See Genome Information for Bacteroides hominis (ex Afrizal et al. 2022)

Pathogen Detection Resources

History (Show revision history)

Comment

Genome-Annotation-Data

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