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ASM2040520v1

Organism name:
Natrinema salinisoli (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: SLN56
BioSample:
SAMN21621845
BioProject:
PRJNA766180
Submitter:
Jiangsu University
Date:
2021/10/10
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_020405205.1 (latest)
RefSeq assembly accession:
GCF_020405205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 4
Expected final version:
no
Genome coverage:
1246.0x
Sequencing technology:
PacBio Sequel

IDs: 11151371 [UID] 29422828 [GenBank] 29482308 [RefSeq]

See Genome Information for Natrinema salinisoli

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_020405205.1-RS_2024_05_06
Annotation Date::05/06/2024 13:38:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,680
CDSs (total)::4,617
Genes (coding)::4,550
CDSs (with protein)::4,550
Genes (RNA)::63
rRNAs::4, 3, 3 (5S, 16S, 23S)
complete rRNAs::4, 3, 3 (5S, 16S, 23S)
tRNAs::51
ncRNAs::2
Pseudo Genes (total)::67
CDSs (without protein)::67
Pseudo Genes (ambiguous residues)::0 of 67
Pseudo Genes (frameshifted)::28 of 67
Pseudo Genes (incomplete)::49 of 67
Pseudo Genes (internal stop)::13 of 67
Pseudo Genes (multiple problems)::20 of 67
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,704,203
Total ungapped length4,704,203
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_020405215.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP084469.1=NZ_CP084469.1
Plasmid unnamed1CP084470.1=NZ_CP084470.1
Plasmid unnamed2CP084471.1=NZ_CP084471.1

Assembly statistics

MoleculeTotal
Length
All4,704,203
Chromosome 4,190,307
Plasmid unnamed1400,082
Plasmid unnamed2113,814

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Natrinema salinisoliNatrinema salinisoli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_029502005.1Natrinema salsiterrestretype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type92.9276.5375.20

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected