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ASM1988055v1

Organism name:
Hephaestia mangrovi (a-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CMS5P-6
BioSample:
SAMN21032051
BioProject:
PRJNA758627
Submitter:
Life sciences Institute
Date:
2021/09/05
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_019880555.1 (latest)
RefSeq assembly accession:
GCF_019880555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAINVU01
Assembly method:
SOAPdenovo v. 2.0
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
Illumina PE150

IDs: 10843241 [UID] 28725928 [GenBank] 28774338 [RefSeq]

See Genome Information for Hephaestia mangrovi

History (Show revision history)

Comment

Bacteria and source DNA available from Li Tuo
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/31/2021 17:53:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,532
CDSs (total)::3,480
Genes (coding)::3,453
CDSs (with protein)::3,453
Genes (RNA)::52
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::27
CDSs (without protein)::27
Pseudo Genes (ambiguous residues)::0 of 27
Pseudo Genes (frameshifted)::12 of 27
Pseudo Genes (incomplete)::13 of 27
Pseudo Genes (internal stop)::8 of 27
Pseudo Genes (multiple problems)::4 of 27
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,788,905
Total ungapped length3,788,905
Number of contigs24
Contig N50642,423
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)24

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,788,905243,788,905642,42300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Hephaestia mangroviHephaestia mangrovi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003550065.1Hephaestia caenitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.3625.5821.42

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected