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ASM1890591v1

Organism name:
Azospira sp. Azo-3 (b-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: Azo-3
BioSample:
SAMN16690065
BioProject:
PRJNA675128
Submitter:
Louisiana State University
Date:
2021/06/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_018905915.1 (latest)
RefSeq assembly accession:
GCF_018905915.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Pacbio Microbial Assembly Application SMRT Link v. 9.0
Expected final version:
yes
Genome coverage:
3470.0x
Sequencing technology:
PacBio Sequel II

IDs: 10318351 [UID] 27414828 [GenBank] 27456698 [RefSeq]

See Genome Information for Azospira sp. Azo-3

History (Show revision history)

Comment

Bacteria and source DNA available from William M. Moe, Department of Civil and Environmental Engineering, Louisiana State University, Baton Rouge, LA USA, moemwil@lsu.edu
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be ... found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/17/2021 11:59:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,949
CDSs (total)::2,885
Genes (coding)::2,873
CDSs (with protein)::2,873
Genes (RNA)::64
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::51
ncRNAs::4
Pseudo Genes (total)::12
CDSs (without protein)::12
Pseudo Genes (ambiguous residues)::0 of 12
Pseudo Genes (frameshifted)::1 of 12
Pseudo Genes (incomplete)::10 of 12
Pseudo Genes (internal stop)::1 of 12
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,277,463
Total ungapped length3,277,463
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_018905945.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP064782.1=NZ_CP064782.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,277,463

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Azospira sp. Azo-3Azospira sp. Azo-3

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004217225.1Azospira oryzaesuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.8917.0716.21

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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