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ASM1888175v1

Organism name:
Polynucleobacter finlandensis (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MWH-Mekk-B1
BioSample:
SAMN04086672
BioProject:
PRJNA278737
Submitter:
University of Innsbruck
Date:
2021/06/14
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_018881755.1 (latest)
RefSeq assembly accession:
GCF_018881755.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACVPS01
Assembly method:
SPAdes v. 3.13.1
Expected final version:
yes
Genome coverage:
650x
Sequencing technology:
Illumina HiSeq

IDs: 10304161 [UID] 27390238 [GenBank] 27456458 [RefSeq]

See Genome Information for Polynucleobacter finlandensis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::09/08/2020 18:51:51
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,321
CDSs (total)::2,276
Genes (coding)::2,269
CDSs (with protein)::2,269
Genes (RNA)::45
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::38
ncRNAs::4
Pseudo Genes (total)::7
CDSs (without protein)::7
Pseudo Genes (ambiguous residues)::1 of 7
Pseudo Genes (frameshifted)::3 of 7
Pseudo Genes (incomplete)::3 of 7
Pseudo Genes (internal stop)::1 of 7
Pseudo Genes (multiple problems)::1 of 7
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,280,072
Total ungapped length2,280,060
Gaps between scaffolds0
Number of scaffolds41
Scaffold N50118,185
Scaffold L506
Number of contigs42
Contig N50118,185
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)41

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,280,072412,280,060118,18510

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Polynucleobacter finlandensisPolynucleobacter finlandensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002206635.1Polynucleobacter aenigmaticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.5537.5440.09

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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