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ASM1886624v1

Organism name:
Novisyntrophococcus fermenticellae (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: JN500902
BioSample:
SAMN19513401
BioProject:
PRJNA734513
Submitter:
Jiangnan University
Date:
2021/06/14
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_018866245.1 (latest)
RefSeq assembly accession:
GCF_018866245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. 2
Expected final version:
yes
Genome coverage:
300.0x
Sequencing technology:
PacBio RSII

IDs: 10299441 [UID] 27374718 [GenBank] 30315118 [RefSeq]

See Genome Information for Novisyntrophococcus fermenticellae

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/29/2024 04:19:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,184
CDSs (total)::3,107
Genes (coding)::3,060
CDSs (with protein)::3,060
Genes (RNA)::77
rRNAs::5, 5, 5 (5S, 16S, 23S)
complete rRNAs::5, 5, 5 (5S, 16S, 23S)
tRNAs::58
ncRNAs::4
Pseudo Genes (total)::47
CDSs (without protein)::47
Pseudo Genes (ambiguous residues)::0 of 47
Pseudo Genes (frameshifted)::24 of 47
Pseudo Genes (incomplete)::26 of 47
Pseudo Genes (internal stop)::3 of 47
Pseudo Genes (multiple problems)::6 of 47
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,420,321
Total ungapped length3,420,321
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_018866255.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP076458.1=NZ_CP076458.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,420,321

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Novisyntrophococcus fermenticellaeNovisyntrophococcus fermenticellae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001571425.1Christensenella minutatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type95.011.261.48

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected