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ASM1735710v2

Organism name:
Natronosalvus caseinilyticus (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: KZCA101
BioSample:
SAMN18203325
BioProject:
PRJNA707374
Submitter:
Jiangsu University
Date:
2022/07/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_017357105.2 (latest)
RefSeq assembly accession:
GCF_017357105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 4
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio

IDs: 13313061 [UID] 34765338 [GenBank] 48319198 [RefSeq]

See Genome Information for Natronosalvus caseinilyticus

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_017357105.1-RS_2024_05_06
Annotation Date::05/06/2024 15:21:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,112
CDSs (total)::4,057
Genes (coding)::3,992
CDSs (with protein)::3,992
Genes (RNA)::55
rRNAs::3, 1, 2 (5S, 16S, 23S)
complete rRNAs::3, 1, 2 (5S, 16S, 23S)
tRNAs::47
ncRNAs::2
Pseudo Genes (total)::65
CDSs (without protein)::65
Pseudo Genes (ambiguous residues)::0 of 65
Pseudo Genes (frameshifted)::28 of 65
Pseudo Genes (incomplete)::41 of 65
Pseudo Genes (internal stop)::13 of 65
Pseudo Genes (multiple problems)::16 of 65
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,235,112
Total ungapped length4,235,112
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_017357115.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP071596.1=NZ_CP071596.1
Plasmid unnamedCP100395.1=NZ_CP100395.1

Assembly statistics

MoleculeTotal
Length
All4,235,112
Chromosome 4,004,921
Plasmid unnamed230,191

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Natronosalvus caseinilyticusNatronosalvus caseinilyticus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024204665.1Natronosalvus rutilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.3175.0373.69

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected