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TS_Cpip_V1

Organism name:
Culex pipiens pallens (northern house mosquito)
Isolate:
TS
Sex:
female
BioSample:
SAMN16414976
BioProject:
PRJNA668557
Submitter:
Shandong First Medical University
Date:
2021/02/02
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_016801865.1 (replaced)
RefSeq assembly accession:
GCF_016801865.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
JADCQB01
Assembly method:
Flye v. 2.6
Expected final version:
yes
Genome coverage:
250.0x
Sequencing technology:
PacBio Sequel

IDs: 9217301 [UID] 24827708 [GenBank] 25020798 [RefSeq]

See Genome Information for Culex pipiens

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length566,674,298
Total ungapped length566,674,298
Number of contigs1,714
Contig N50838,087
Contig L50196
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)1,714

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced566,659,4421,713566,659,442838,08700
MoleculeTotal
Length
Mitochondrion MT14,856
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