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ARS-UI_Ramb_v2.0

Organism name:
Ovis aries (sheep)
Infraspecific name:
Breed: Rambouillet
Infraspecific name:
Strain: OAR_USU_Benz2616
Sex:
female
BioSample:
SAMN17575729
BioProject:
PRJNA675594
Submitter:
University of Idaho
Date:
2021/02/03
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_016772045.1 (latest)
RefSeq assembly accession:
GCF_016772045.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Different: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
JAEVFA01
Assembly method:
Canu v. 1.8; Nanopolish v. 0.12.5; Salsa v. 2.2; PB Jelly v. 15.8.24; Freebayes v. 1.3.1
Expected final version:
yes
Genome coverage:
55.0x
Sequencing technology:
Oxford Nanopore PromethION; PacBio RSII; Illumina HiSeq

IDs: 9219741 [UID] 24832408 [GenBank] 27481198 [RefSeq]

See Genome Information for Ovis aries

There are 9 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,628,146,905
Total ungapped length2,628,104,905
Gaps between scaffolds0
Number of scaffolds142
Scaffold N50101,274,418
Scaffold L508
Number of contigs226
Contig N5043,178,051
Contig L5024
Total number of chromosomes and plasmids28
Number of component sequences (WGS or clone)142

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_016772055.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM028704.1=NC_056054.10
Chromosome 2CM028705.1=NC_056055.10
Chromosome 3CM028706.1=NC_056056.10
Chromosome 4CM028707.1=NC_056057.10
Chromosome 5CM028708.1=NC_056058.10
Chromosome 6CM028709.1=NC_056059.10
Chromosome 7CM028710.1=NC_056060.10
Chromosome 8CM028711.1=NC_056061.10
Chromosome 9CM028712.1=NC_056062.10
Chromosome 10CM028713.1=NC_056063.10
Chromosome 11CM028714.1=NC_056064.10
Chromosome 12CM028715.1=NC_056065.10
Chromosome 13CM028716.1=NC_056066.10
Chromosome 14CM028717.1=NC_056067.10
Chromosome 15CM028718.1=NC_056068.10
Chromosome 16CM028719.1=NC_056069.10
Chromosome 17CM028720.1=NC_056070.10
Chromosome 18CM028721.1=NC_056071.10
Chromosome 19CM028722.1=NC_056072.10
Chromosome 20CM028723.1=NC_056073.10
Chromosome 21CM028724.1=NC_056074.10
Chromosome 22CM028725.1=NC_056075.10
Chromosome 23CM028726.1=NC_056076.10
Chromosome 24CM028727.1=NC_056077.10
Chromosome 25CM028728.1=NC_056078.10
Chromosome 26CM028729.1=NC_056079.10
Chromosome XCM028730.1=NC_056080.10
unplacedn/an/an/a114

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,628,130,2891412,628,088,289101,274,418840
Chromosome 1278,617,2021278,612,202278,617,202100
Chromosome 2250,202,0581250,198,558250,202,05870
Chromosome 3226,089,1001226,087,100226,089,10040
Chromosome 4121,578,0991121,577,099121,578,09920
Chromosome 5108,220,7881108,218,288108,220,78850
Chromosome 6118,469,6971118,468,697118,469,69720
Chromosome 7101,274,4181101,272,418101,274,41840
Chromosome 891,792,871191,791,87191,792,87120
Chromosome 995,179,658195,178,65895,179,65820
Chromosome 1086,459,471186,457,47186,459,47140
Chromosome 1162,547,497162,546,49762,547,49720
Chromosome 1280,403,655180,403,15580,403,65510
Chromosome 1383,511,835183,510,83583,511,83520
Chromosome 1466,516,657166,515,15766,516,65730
Chromosome 1582,538,637182,536,63782,538,63740
Chromosome 1671,897,364171,896,86471,897,36410
Chromosome 1773,167,223173,166,22373,167,22320
Chromosome 1867,984,460167,983,46067,984,46020
Chromosome 1960,561,550160,560,55060,561,55020
Chromosome 2051,451,717151,450,21751,451,71730
Chromosome 2147,514,194147,512,69447,514,19430
Chromosome 2251,512,491151,510,49151,512,49140
Chromosome 2362,440,644162,439,64462,440,64420
Chromosome 2442,630,236142,630,23642,630,23600
Chromosome 2544,863,754144,863,75444,863,75400
Chromosome 2645,052,359145,051,85945,052,35910
Chromosome X143,171,7251143,168,225143,171,72570
unplaced12,480,92911412,479,429384,31630
MoleculeTotal
Length
Mitochondrion MT16,616
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