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bGalGal1.mat.broiler.GRCg7b

Description:
bGalGal1 maternal broiler GRCg7b
Organism name:
Gallus gallus (chicken)
Infraspecific name:
Breed: Cross of Broiler mother + white leghorn layer father
Isolate:
bGalGal1
Sex:
female
BioSample:
SAMN15960293
BioProject:
PRJNA660757
Submitter:
Vertebrate Genomes Project
Date:
2021/01/19
Release type:
minor
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_016699485.1 (latest)
RefSeq assembly accession:
GCF_016699485.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAENSK01
Assembly method:
TrioCanu v. 1.8; purge_dups v. 1.0.0; Scaff 10x v. 4.1.0; Bionano solve v. 3.2.1_04122018; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Freebayes v. 1.3.1; gEVAL manual curation v. 2020-07-22; VGP trio assembly pipeline v. 1.6
Expected final version:
no
Genome coverage:
102.01x
Sequencing technology:
PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

IDs: 9158331 [UID] 24650218 [GenBank] 25808658 [RefSeq]

See Genome Information for Gallus gallus

Pathogen Detection Resources

There are 39 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,053,332,251
Total ungapped length1,049,948,333
Gaps between scaffolds0
Number of scaffolds214
Scaffold N5090,861,225
Scaffold L504
Number of contigs677
Contig N5018,834,961
Contig L5018
Total number of chromosomes and plasmids42
Number of component sequences (WGS or clone)677

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_016699495.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM028482.1=NC_052532.14
Chromosome 2CM028483.1=NC_052533.10
Chromosome 3CM028484.1=NC_052534.10
Chromosome 4CM028485.1=NC_052535.12
Chromosome 5CM028486.1=NC_052536.10
Chromosome 6CM028487.1=NC_052537.10
Chromosome 7CM028488.1=NC_052538.10
Chromosome 8CM028489.1=NC_052539.10
Chromosome 9CM028490.1=NC_052540.10
Chromosome 10CM028491.1=NC_052541.10
Chromosome 11CM028492.1=NC_052542.10
Chromosome 12CM028493.1=NC_052543.10
Chromosome 13CM028494.1=NC_052544.10
Chromosome 14CM028495.1=NC_052545.10
Chromosome 15CM028496.1=NC_052546.10
Chromosome 16CM028497.1=NC_052547.15
Chromosome 17CM028498.1=NC_052548.10
Chromosome 18CM028499.1=NC_052549.10
Chromosome 19CM028500.1=NC_052550.10
Chromosome 20CM028501.1=NC_052551.10
Chromosome 21CM028502.1=NC_052552.10
Chromosome 22CM028503.1=NC_052553.10
Chromosome 23CM028504.1=NC_052554.10
Chromosome 24CM028505.1=NC_052555.10
Chromosome 25CM028506.1=NC_052556.10
Chromosome 26CM028507.1=NC_052557.10
Chromosome 27CM028508.1=NC_052558.10
Chromosome 28CM028509.1=NC_052559.10
Chromosome 29CM028510.1=NC_052560.12
Chromosome 30CM028511.1=NC_052561.10
Chromosome 31CM028512.1=NC_052562.13
Chromosome 32CM028513.1=NC_052563.16
Chromosome 33CM028514.1=NC_052564.12
Chromosome 34CM028515.1=NC_052565.10
Chromosome 35CM028516.1=NC_052566.15
Chromosome 36CM028517.1=NC_052567.16
Chromosome 37CM028518.1=NC_052568.16
Chromosome 38CM028519.1=NC_052569.10
Chromosome 39CM028520.1=NC_052570.12
Chromosome WCM028521.1=NC_052571.119
Chromosome ZCM028522.1=NC_052572.10
unplacedn/an/an/a110

Assembly statistics

MoleculeSequence RoleTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
AllAssembled molecule1,053,315,4672131,049,931,54990,861,2254630
Chromosome 1AllAssembled moleculeUnlocalized scaffolds196,657,336196,449,156208,180514196,653,110196,444,930208,180196,449,156196,449,15650,78129290000
Chromosome 2Assembled molecule149,539,2841149,535,758149,539,284220
Chromosome 3Assembled molecule110,642,5021110,629,012110,642,502120
Chromosome 4AllAssembled moleculeUnlocalized scaffolds90,909,38690,861,22548,16131290,907,58690,859,42548,16190,861,22590,861,22524,49110100000
Chromosome 5Assembled molecule59,506,338159,491,04659,506,33850
Chromosome 6Assembled molecule36,220,557135,813,43436,220,557150
Chromosome 7Assembled molecule36,382,834136,382,43436,382,83420
Chromosome 8Assembled molecule29,578,256129,463,00729,578,25620
Chromosome 9Assembled molecule23,733,309123,733,30923,733,30900
Chromosome 10Assembled molecule20,453,248120,452,44820,453,24850
Chromosome 11Assembled molecule19,638,187119,637,98719,638,18710
Chromosome 12Assembled molecule20,119,077120,118,57720,119,07730
Chromosome 13Assembled molecule17,905,061117,904,66117,905,06130
Chromosome 14Assembled molecule15,331,188115,330,48815,331,18820
Chromosome 15Assembled molecule12,703,657112,703,65712,703,65700
Chromosome 16AllAssembled moleculeUnlocalized scaffolds3,135,7542,706,039429,7156153,129,2412,700,026429,2152,706,0392,706,039236,75530291000
Chromosome 17Assembled molecule11,092,391111,085,08811,092,391110
Chromosome 18Assembled molecule11,623,896111,519,48311,623,89680
Chromosome 19Assembled molecule10,455,293110,454,29310,455,29350
Chromosome 20Assembled molecule14,265,659114,264,85914,265,65940
Chromosome 21Assembled molecule6,970,75416,970,5546,970,75410
Chromosome 22Assembled molecule4,686,65714,685,6574,686,65740
Chromosome 23Assembled molecule6,253,42116,175,4376,253,42140
Chromosome 24Assembled molecule6,478,33916,478,1396,478,33910
Chromosome 25Assembled molecule3,067,73713,064,7373,067,737120
Chromosome 26Assembled molecule5,349,05115,349,0515,349,05100
Chromosome 27Assembled molecule5,228,75315,227,5535,228,75390
Chromosome 28Assembled molecule5,437,36415,435,1645,437,36490
Chromosome 29AllAssembled moleculeUnlocalized scaffolds818,337726,47891,859312646,217554,35891,859726,478726,47852,620550000
Chromosome 30Assembled molecule755,6661754,066755,66660
Chromosome 31AllAssembled moleculeUnlocalized scaffolds2,705,1142,457,334247,7804132,701,6142,454,334247,2802,457,3342,457,33489,87517161000
Chromosome 32AllAssembled moleculeUnlocalized scaffolds570,033125,424444,609716569,533125,424444,10999,000125,42472,078101000
Chromosome 33AllAssembled moleculeUnlocalized scaffolds3,954,5993,839,931114,6683122,794,0382,679,370114,6683,839,9313,839,93162,49915150000
Chromosome 34Assembled molecule3,469,34313,388,2673,469,343160
Chromosome 35AllAssembled moleculeUnlocalized scaffolds1,025,883554,126471,7576151,023,883553,226470,657554,126554,126259,507853000
Chromosome 36AllAssembled moleculeUnlocalized scaffolds937,366358,375578,991716934,566357,675576,891244,274358,375135,931835000
Chromosome 37AllAssembled moleculeUnlocalized scaffolds786,586157,853628,733716786,386157,653628,733147,375157,853147,375110000
Chromosome 38Assembled molecule667,3121666,612667,31250
Chromosome 39AllAssembled moleculeUnlocalized scaffolds360,151177,356182,795312360,151177,356182,795122,554177,356122,554000000
Chromosome WAllAssembled moleculeUnlocalized scaffolds11,284,5199,109,9402,174,5792011910,920,8618,748,1822,172,6799,109,9409,109,940121,82628235000
Chromosome ZAssembled molecule86,044,486185,224,71286,044,4861270
unplacedAssembled molecule6,570,7831106,564,87377,453170
MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
Mitochondrion MT16,784116,78416,78400