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SCBI_Odam_1.1

Organism name:
Oryx dammah (scimitar-horned oryx)
Isolate:
SB20612
Sex:
male
BioSample:
SAMN14518290
BioProject:
PRJNA622505
Submitter:
Smithsonian Conservation Biology Institute
Date:
2020/09/25
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_014754425.2 (latest)
RefSeq assembly accession:
GCF_014754425.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
JABAEV01
Assembly method:
Supernova v. 2.0.1; 3D de novo assembly (3D-DNA) pipeline v. 180419
Expected final version:
no
Genome coverage:
120.0x
Sequencing technology:
Illumina NovaSeq; Illumina HiSeq; Hi-C; 10X Genomics

IDs: 9513571 [UID] 25514868 [GenBank] 25515378 [RefSeq]

See Genome Information for Oryx dammah

History (Show revision history)

Comment

In March 2021 1359 JABAEV01 sequences were suppressed because they are contaminants.

Global statistics

Total sequence length2,707,182,720
Total ungapped length2,688,266,700
Gaps between scaffolds0
Number of scaffolds9,089
Scaffold N50100,398,400
Scaffold L5011
Number of contigs25,330
Contig N50374,342
Contig L502,073
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)9,089

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,707,165,9649,0882,688,249,944100,398,40016,2410
MoleculeTotal
Length
Mitochondrion MT16,756
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