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ASM1465063v1

Organism name:
Streptomyces noursei (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 4718
BioSample:
SAMD00245500
BioProject:
PRJDB10510
Submitter:
WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)
Date:
2020/09/12
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Relation to type material:
assembly from synonym type material
GenBank assembly accession:
GCA_014650635.1 (latest)
RefSeq assembly accession:
GCF_014650635.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BMVI01
Assembly method:
gcType assembly pipeline
Genome coverage:
59X
Sequencing technology:
Illumina HiSeq X Ten

IDs: 8120861 [UID] 22193838 [GenBank] 22232878 [RefSeq]

See Genome Information for Streptomyces noursei

Pathogen Detection Resources

There are 18 assemblies for this organism

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History (Show revision history)

Comment

Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10010341 

Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp)

Global statistics

Total sequence length10,266,931
Total ungapped length10,266,846
Gaps between scaffolds0
Number of scaffolds179
Scaffold N50221,021
Scaffold L5013
Number of contigs182
Contig N50214,837
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)179

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
unplaced10,266,93117910,266,846221,02130

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces nourseiStreptomyces noursei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_026913165.1Streptomyces nourseisyntype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_026913165.1Streptomyces nourseisyntype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9297.55
Best-match type99.9999.9297.55

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna