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ASM1464711v1

Organism name:
Halarchaeum rubridurum (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 16108
BioSample:
SAMD00245259
BioProject:
PRJDB10510
Submitter:
WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)
Date:
2020/09/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_014647115.1 (latest)
RefSeq assembly accession:
GCF_014647115.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BMOO01
Assembly method:
gcType assembly pipeline
Genome coverage:
142X
Sequencing technology:
Illumina HiSeq X Ten

IDs: 8118941 [UID] 22190318 [GenBank] 22208448 [RefSeq]

See Genome Information for Halarchaeum rubridurum

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10009017 

Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp)

Global statistics

Total sequence length2,813,544
Total ungapped length2,813,544
Number of contigs25
Contig N50499,095
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)25

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced2,813,544252,813,544499,09500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halarchaeum rubridurumHalarchaeum rubridurum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017873775.1Halarchaeum rubridurumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017873775.1Halarchaeum rubridurumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.9499.85
Best-match type99.9999.9499.85

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna