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ASM1339110v1

Organism name:
Natronomonas salina (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: YPL13
BioSample:
SAMN15354321
BioProject:
PRJNA641280
Submitter:
Jiangsu University
Date:
2020/07/07
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_013391105.1 (latest)
RefSeq assembly accession:
GCF_013391105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
ABySS v. 2.0.2
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 7330661 [UID] 20275808 [GenBank] 20291398 [RefSeq]

See Genome Information for Natronomonas salina

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_013391105.1-RS_2024_05_05
Annotation Date::05/05/2024 02:48:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,946
CDSs (total)::3,896
Genes (coding)::3,864
CDSs (with protein)::3,864
Genes (RNA)::50
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::45
ncRNAs::2
Pseudo Genes (total)::32
CDSs (without protein)::32
Pseudo Genes (ambiguous residues)::0 of 32
Pseudo Genes (frameshifted)::23 of 32
Pseudo Genes (incomplete)::9 of 32
Pseudo Genes (internal stop)::3 of 32
Pseudo Genes (multiple problems)::3 of 32
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,746,575
Total ungapped length3,746,575
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_013391115.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP058335.1=NZ_CP058335.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,746,575

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Natronomonas salinaNatronomonas salina

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024298905.1Natronomonas marinatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.9628.7526.97

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected