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Mhudiblu_PPA_v0

Organism name:
Pan paniscus (pygmy chimpanzee)
Isolate:
Mhudiblu (Carbone #601152)
Sex:
female
BioSample:
SAMN11123633
BioProject:
PRJNA526933
Submitter:
University of Washington, University of Bari, Italy
Date:
2020/05/15
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_013052645.1 (replaced)
RefSeq assembly accession:
GCF_013052645.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
SSBP01
Assembly method:
Falcon v. (Git id 53444482 dgordon branch available on 2017.06.13)
Expected final version:
no
Sequencing technology:
PacBio RSII; Illumina

IDs: 7133581 [UID] 19606358 [GenBank] 19638978 [RefSeq]

See Genome Information for Pan paniscus

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,051,901,337
Total ungapped length3,015,350,297
Gaps between scaffolds64
Number of scaffolds4,357
Scaffold N5068,246,502
Scaffold L5016
Number of contigs4,976
Contig N5016,579,680
Contig L5048
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)4,976

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_013052655.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM023027.1=NC_048239.10
Chromosome 2ACM023028.1=NC_048240.10
Chromosome 2BCM023029.1=NC_048241.10
Chromosome 3CM023030.1=NC_048242.10
Chromosome 4CM023031.1=NC_048243.10
Chromosome 5CM023032.1=NC_048244.10
Chromosome 6CM023033.1=NC_048245.10
Chromosome 7CM023034.1=NC_048246.10
Chromosome 8CM023035.1=NC_048247.10
Chromosome 9CM023036.1=NC_048248.10
Chromosome 10CM023037.1=NC_048249.10
Chromosome 11CM023038.1=NC_048250.10
Chromosome 12CM023039.1=NC_048251.10
Chromosome 13CM023040.1=NC_048252.10
Chromosome 14CM023041.1=NC_048253.10
Chromosome 15CM023042.1=NC_048254.10
Chromosome 16CM023043.1=NC_048255.10
Chromosome 17CM023044.1=NC_048256.10
Chromosome 18CM023045.1=NC_048257.10
Chromosome 19CM023046.1=NC_048258.10
Chromosome 20CM023047.1=NC_048259.10
Chromosome 21CM023048.1=NC_048260.10
Chromosome 22CM023049.1=NC_048261.10
Chromosome XCM023050.1=NC_048262.10
unplacedn/an/an/a4,268

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,051,884,7744,3563,015,333,73468,246,50261964
Chromosome 1224,621,9585220,997,26170,689,685514
Chromosome 2A104,947,7894103,786,09987,981,191283
Chromosome 2B129,381,0341128,295,569129,381,034140
Chromosome 3195,577,3934195,047,30675,898,699213
Chromosome 4182,437,4343181,719,665110,128,588182
Chromosome 5176,502,5932175,897,314158,698,778341
Chromosome 6168,932,3425167,194,355106,299,193254
Chromosome 7150,536,3597148,119,69440,351,324456
Chromosome 8141,842,2813140,480,805130,833,539162
Chromosome 9109,767,8033109,102,89838,513,894162
Chromosome 10128,853,8613127,403,41082,081,466272
Chromosome 11129,867,8945128,778,19679,737,938184
Chromosome 12131,319,6023130,620,58278,339,950232
Chromosome 1395,736,914395,347,52467,292,15052
Chromosome 1487,894,197287,229,11186,960,602101
Chromosome 1580,799,215477,887,03050,988,169233
Chromosome 1671,000,456368,862,91345,941,266372
Chromosome 1777,747,126676,408,54443,085,344295
Chromosome 1874,093,087173,811,72174,093,08770
Chromosome 1955,604,062654,161,91117,447,110285
Chromosome 2059,769,695559,326,52532,257,530114
Chromosome 2133,144,400132,979,06733,144,40040
Chromosome 2231,064,846430,827,66922,282,315193
Chromosome X146,233,7855142,690,71241,265,475444
unplaced264,208,6484,268258,357,853114,730660
MoleculeTotal
Length
Mitochondrion MT16,563
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