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ASM1293336v1

Organism name:
Sulfobacillus sp. DSM 109850 (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: DSM 109850
BioSample:
SAMN14676984
BioProject:
PRJNA627582
Submitter:
Federal Institute for Geosciences and Natural Resources
Date:
2020/04/29
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_012933365.1 (latest)
RefSeq assembly accession:
GCF_012933365.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JABBVZ01
Assembly method:
SPAdes v. 3.14.0
Expected final version:
yes
Genome coverage:
500.0x
Sequencing technology:
Illumina NextSeq

IDs: 7050271 [UID] 19357628 [GenBank] 19407008 [RefSeq]

See Genome Information for Sulfobacillus sp. DSM 109850

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Geomicrobiology Unit, Federal Institute for Geosciences and Natural Resources, 30655 Hannover, Germany

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/24/2020 19:04:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,721
CDSs (total)::4,647
Genes (coding)::4,530
CDSs (with protein)::4,530
Genes (RNA)::74
rRNAs::3, 4 (16S, 23S)
complete rRNAs::1 (16S)
partial rRNAs::2, 4 (16S, 23S)
tRNAs::63
ncRNAs::4
Pseudo Genes (total)::117
CDSs (without protein)::117
Pseudo Genes (ambiguous residues)::0 of 117
Pseudo Genes (frameshifted)::43 of 117
Pseudo Genes (incomplete)::69 of 117
Pseudo Genes (internal stop)::16 of 117
Pseudo Genes (multiple problems)::10 of 117
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,395,015
Total ungapped length4,395,015
Number of contigs397
Contig N5037,136
Contig L5036
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)397

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,395,0153974,395,01537,13600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sulfobacillus sp. DSM 109850Sulfobacillus sp. DSM 109850

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900176145.1Sulfobacillus thermosulfidooxidanstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.820.680.78

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena
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