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ASM1130541v1

Organism name:
Flavobacterium bernardetii (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: F-372
BioSample:
SAMN14167127
BioProject:
PRJNA608177
Submitter:
ErciyesUniversity
Date:
2020/03/16
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_011305415.1 (latest)
RefSeq assembly accession:
GCF_011305415.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAANOQ01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
959.0x
Sequencing technology:
Illumina NovaSeq

IDs: 6228101 [UID] 17636218 [GenBank] 17949308 [RefSeq]

See Genome Information for Flavobacterium bernardetii

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Erciyes University, Faculty of Veterinary Medicine, Aquatic Animal Disease Department, Kayseri, Turkey

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/10/2020 12:10:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,103
CDSs (total)::3,055
Genes (coding)::3,035
CDSs (with protein)::3,035
Genes (RNA)::48
rRNAs::1, 2, 2 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 23S)
partial rRNAs::2, 1 (16S, 23S)
tRNAs::40
ncRNAs::3
Pseudo Genes (total)::20
CDSs (without protein)::20
Pseudo Genes (ambiguous residues)::1 of 20
Pseudo Genes (frameshifted)::4 of 20
Pseudo Genes (incomplete)::12 of 20
Pseudo Genes (internal stop)::7 of 20
Pseudo Genes (multiple problems)::4 of 20
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,386,502
Total ungapped length3,385,826
Gaps between scaffolds0
Number of scaffolds37
Scaffold N50350,217
Scaffold L503
Number of contigs44
Contig N50300,581
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)37

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,386,502373,385,826350,21770

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Flavobacterium bernardetiiFlavobacterium bernardetii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900108955.1Flavobacterium terrigenatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.1062.1166.31

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected