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ASM1064508v1

Organism name:
Acipenser ruthenus (sterlet)
Isolate:
Gen_M01
BioSample:
SAMN12612932
BioProject:
PRJNA561280
Submitter:
University of Wuerzburg
Date:
2020/02/19
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_010645085.1 (latest)
RefSeq assembly accession:
GCF_010645085.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
VTUV01
Assembly method:
SmartDeNovo v. May-2017; 3D-DNA v. 180114
Expected final version:
yes
Genome coverage:
42.0x
Sequencing technology:
Illumina NovaSeq; PacBio; Hi-C

IDs: 5888751 [UID] 16895748 [GenBank] 19716318 [RefSeq]

See Genome Information for Acipenser ruthenus

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length1,830,501,248
Total ungapped length1,829,247,048
Gaps between scaffolds0
Number of scaffolds3,404
Scaffold N5042,361,471
Scaffold L5012
Number of contigs9,675
Contig N50601,142
Contig L50837
Total number of chromosomes and plasmids61
Number of component sequences (WGS or clone)3,404

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_010645275.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM021251.1=NC_048323.10
Chromosome 2CM021252.1=NC_048324.10
Chromosome 3CM021253.1=NC_048325.10
Chromosome 4CM021254.1=NC_048326.10
Chromosome 5CM021255.1=NC_048327.10
Chromosome 6CM021256.1=NC_048328.10
Chromosome 7CM021257.1=NC_048329.10
Chromosome 8CM021258.1=NC_048330.10
Chromosome 9CM021259.1=NC_048331.10
Chromosome 10CM021260.1=NC_048332.10
Chromosome 11CM021261.1=NC_048333.10
Chromosome 12CM021262.1=NC_048334.10
Chromosome 13CM021263.1=NC_048335.10
Chromosome 14CM021264.1=NC_048336.10
Chromosome 15CM021265.1=NC_048337.10
Chromosome 16CM021266.1=NC_048338.10
Chromosome 17CM021267.1=NC_048339.10
Chromosome 18CM021268.1=NC_048340.10
Chromosome 19CM021269.1=NC_048341.10
Chromosome 20CM021270.1=NC_048342.10
Chromosome 21CM021271.1=NC_048343.10
Chromosome 22CM021272.1=NC_048344.10
Chromosome 23CM021273.1=NC_048345.10
Chromosome 24CM021274.1=NC_048346.10
Chromosome 25CM021275.1=NC_048347.10
Chromosome 26CM021276.1=NC_048348.10
Chromosome 27CM021277.1=NC_048349.10
Chromosome 28CM021278.1=NC_048350.10
Chromosome 29CM021279.1=NC_048351.10
Chromosome 30CM021280.1=NC_048352.10
Chromosome 31CM021281.1=NC_048353.10
Chromosome 32CM021282.1=NC_048354.10
Chromosome 33CM021283.1=NC_048355.10
Chromosome 34CM021284.1=NC_048356.10
Chromosome 35CM021285.1=NC_048357.10
Chromosome 36CM021286.1=NC_048358.10
Chromosome 37CM021287.1=NC_048359.10
Chromosome 38CM021288.1=NC_048360.10
Chromosome 39CM021289.1=NC_048361.10
Chromosome 40CM021290.1=NC_048362.10
Chromosome 41CM021291.1=NC_048363.10
Chromosome 42CM021292.1=NC_048364.10
Chromosome 43CM021293.1=NC_048365.10
Chromosome 44CM021294.1=NC_048366.10
Chromosome 45CM021295.1=NC_048367.10
Chromosome 46CM021296.1=NC_048368.10
Chromosome 47CM021297.1=NC_048369.10
Chromosome 48CM021298.1=NC_048370.10
Chromosome 49CM021299.1=NC_048371.10
Chromosome 50CM021300.1=NC_048372.10
Chromosome 51CM021301.1=NC_048373.10
Chromosome 52CM021302.1=NC_048374.10
Chromosome 53CM021303.1=NC_048375.10
Chromosome 54CM021304.1=NC_048376.10
Chromosome 55CM021305.1=NC_048377.10
Chromosome 56CM021306.1=NC_048378.10
Chromosome 57CM021307.1=NC_048379.10
Chromosome 58CM021308.1=NC_048380.10
Chromosome 59CM021309.1=NC_048381.10
Chromosome 60CM021310.1=NC_048382.10
unplacedn/an/an/a3,343

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,830,484,4583,4031,829,230,25842,361,4716,2710
Chromosome 1122,559,9821122,469,782122,559,9824510
Chromosome 2108,220,4681108,160,468108,220,4683000
Chromosome 3106,749,0431106,692,443106,749,0432830
Chromosome 4105,784,5291105,723,729105,784,5293040
Chromosome 588,082,269188,037,06988,082,2692260
Chromosome 684,904,194184,864,79484,904,1941970
Chromosome 764,984,380164,950,58064,984,3801690
Chromosome 863,073,767163,027,36763,073,7672320
Chromosome 956,397,294156,360,09456,397,2941860
Chromosome 1049,635,273149,612,67349,635,2731130
Chromosome 1143,054,992143,030,59243,054,9921220
Chromosome 1242,361,471142,334,87142,361,4711330
Chromosome 1337,059,571137,044,77137,059,571740
Chromosome 1436,880,936136,858,93636,880,9361100
Chromosome 1534,739,146134,715,94634,739,1461160
Chromosome 1634,690,505134,665,70534,690,5051240
Chromosome 1733,696,931133,681,73133,696,931760
Chromosome 1833,377,298133,364,29833,377,298650
Chromosome 1929,822,879129,801,87929,822,8791050
Chromosome 2028,949,873128,927,87328,949,8731100
Chromosome 2128,711,989128,692,58928,711,989970
Chromosome 2228,630,400128,611,40028,630,400950
Chromosome 2328,080,677128,064,27728,080,677820
Chromosome 2427,918,051127,900,25127,918,051890
Chromosome 2526,390,102126,363,90226,390,1021310
Chromosome 2626,065,435126,050,83526,065,435730
Chromosome 2725,289,324125,272,92425,289,324820
Chromosome 2821,672,497121,655,09721,672,497870
Chromosome 2918,992,144118,981,34418,992,144540
Chromosome 3018,310,215118,292,81518,310,215870
Chromosome 3113,157,078113,147,47813,157,078480
Chromosome 3212,953,733112,920,73312,953,7331650
Chromosome 3311,347,065111,308,26511,347,0651940
Chromosome 3411,258,359111,238,55911,258,359990
Chromosome 3511,115,818111,078,41811,115,8181870
Chromosome 3611,042,709110,984,50911,042,7092910
Chromosome 3711,008,459110,998,25911,008,459510
Chromosome 388,398,38918,388,9898,398,389470
Chromosome 397,837,26317,836,0637,837,26360
Chromosome 407,816,33517,814,9357,816,33570
Chromosome 417,104,31817,095,7187,104,318430
Chromosome 427,088,32417,086,1247,088,324110
Chromosome 436,938,81416,924,8146,938,814700
Chromosome 446,856,85316,855,2536,856,85380
Chromosome 456,379,58516,351,5856,379,5851400
Chromosome 466,336,35316,330,9536,336,353270
Chromosome 475,782,36115,777,9615,782,361220
Chromosome 485,626,46215,623,6625,626,462140
Chromosome 495,536,74015,524,1405,536,740630
Chromosome 505,455,94715,441,1475,455,947740
Chromosome 514,924,92214,914,7224,924,922510
Chromosome 524,263,31114,254,7114,263,311430
Chromosome 533,954,98813,945,7883,954,988460
Chromosome 543,509,40213,506,8023,509,402130
Chromosome 553,478,26513,475,4653,478,265140
Chromosome 563,260,27813,253,6783,260,278330
Chromosome 572,321,98912,309,7892,321,989610
Chromosome 58901,6411898,441901,641160
Chromosome 59547,5601545,960547,56080
Chromosome 60487,5421484,742487,542140
unplaced178,707,9603,343178,701,56096,781320
MoleculeTotal
Length
Mitochondrion MT16,790
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