U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM983155v1

Organism name:
Halobacterium bonnevillei (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: PCN9
BioSample:
SAMN13677126
BioProject:
PRJNA597550
Submitter:
Louisiana State University
Date:
2020/01/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_009831555.1 (latest)
RefSeq assembly accession:
GCF_009831555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WUUU01
Assembly method:
SPAdes v. 3.11
Expected final version:
yes
Genome coverage:
783.0x
Sequencing technology:
IonTorrent

IDs: 5434021 [UID] 15732928 [GenBank] 15855058 [RefSeq]

See Genome Information for Halobacterium bonnevillei

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from American Type Culture Collection TSD-126

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/31/2019 18:24:58
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.10
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,864
CDSs (total)::3,813
Genes (coding)::3,550
CDSs (with protein)::3,550
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::263
CDSs (without protein)::263
Pseudo Genes (ambiguous residues)::0 of 263
Pseudo Genes (frameshifted)::196 of 263
Pseudo Genes (incomplete)::72 of 263
Pseudo Genes (internal stop)::9 of 263
Pseudo Genes (multiple problems)::14 of 263
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,499,479
Total ungapped length3,499,479
Number of contigs362
Contig N5016,966
Contig L5058
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)362

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,499,4793623,499,47916,96600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halobacterium bonnevilleiHalobacterium bonnevillei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001488575.1Halobacterium hubeiensetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.6335.7940.02

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected