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ASM973569v1

  • Anomalous assembly.
Organism name:
Christiangramia bathymodioli (CFB group bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: BOM4
BioSample:
SAMN11040578
BioProject:
PRJNA525008
Submitter:
Ocean University of China
Date:
2019/12/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
  • not used as type
GenBank assembly accession:
GCA_009735695.1 (latest)
RefSeq assembly accession:
GCF_009735695.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SRSL01
Assembly method:
SOAPdenovo v. DEC-2018
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 5381451 [UID] 15589288 [GenBank] 15599368 [RefSeq]

See Genome Information for Christiangramia bathymodioli

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/08/2019 16:30:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,600
CDSs (total)::3,546
Genes (coding)::3,495
CDSs (with protein)::3,495
Genes (RNA)::54
rRNAs::4, 1, 4 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::2, 3 (5S, 23S)
tRNAs::41
ncRNAs::4
Pseudo Genes (total)::51
CDSs (without protein)::51
Pseudo Genes (ambiguous residues)::4 of 51
Pseudo Genes (frameshifted)::22 of 51
Pseudo Genes (incomplete)::19 of 51
Pseudo Genes (internal stop)::17 of 51
Pseudo Genes (multiple problems)::11 of 51
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,015,541
Total ungapped length4,015,541
Number of contigs210
Contig N50794,960
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)210

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,015,5412104,015,541794,96000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Christiangramia bathymodioliChristiangramia bathymodioli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_022570735.2Christiangramia oceanisediministype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.6066.3170.95

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna