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ASM972954v1

Organism name:
Acidianus infernus (crenarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:3191
Infraspecific name:
Strain: DSM 3191
BioSample:
SAMN09933090
BioProject:
PRJNA488459
Submitter:
North Carolina State University
Date:
2019/12/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_009729545.1 (latest)
RefSeq assembly accession:
GCF_009729545.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WFIY01
Assembly method:
Flye v. 2.4.2
Expected final version:
yes
Genome coverage:
348x
Sequencing technology:
PacBio Sequel

IDs: 5376081 [UID] 15571858 [GenBank] 15587888 [RefSeq]

See Genome Information for Acidianus infernus

There are 3 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/16/2019 13:42:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.9
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,438
CDSs (total)::2,387
Genes (coding)::2,296
CDSs (with protein)::2,296
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::46
ncRNAs::2
Pseudo Genes (total)::91
CDSs (without protein)::91
Pseudo Genes (ambiguous residues)::0 of 91
Pseudo Genes (frameshifted)::61 of 91
Pseudo Genes (incomplete)::52 of 91
Pseudo Genes (internal stop)::27 of 91
Pseudo Genes (multiple problems)::43 of 91
CRISPR Arrays::8
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,222,414
Total ungapped length2,222,414
Number of contigs4
Contig N502,186,600
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,222,41442,222,4142,186,60000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acidianus infernusAcidianus infernus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009428885.1Acidianus ambivalenstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.3479.1375.56

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected