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ASM964907v1

Organism name:
Aeromicrobium yanjiei (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: MF47
BioSample:
SAMN13106925
BioProject:
PRJNA579222
Submitter:
Chinese center for disease control and prevention
Date:
2019/11/11
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_009649075.1 (latest)
RefSeq assembly accession:
GCF_009649075.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SOAPdenovo v. 4.0
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio

IDs: 5296871 [UID] 15344428 [GenBank] 15404648 [RefSeq]

See Genome Information for Aeromicrobium yanjiei

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_009649075.1-RS_2024_04_19
Annotation Date::04/19/2024 05:56:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,582
CDSs (total)::3,527
Genes (coding)::3,518
CDSs (with protein)::3,518
Genes (RNA)::55
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::46
ncRNAs::3
Pseudo Genes (total)::9
CDSs (without protein)::9
Pseudo Genes (ambiguous residues)::0 of 9
Pseudo Genes (frameshifted)::4 of 9
Pseudo Genes (incomplete)::6 of 9
Pseudo Genes (internal stop)::0 of 9
Pseudo Genes (multiple problems)::1 of 9
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,682,026
Total ungapped length3,682,026
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_009649085.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP045737.1=NZ_CP045737.1
Plasmid p001CP045736.1=NZ_CP045736.1

Assembly statistics

MoleculeTotal
Length
All3,682,026
Chromosome 3,630,722
Plasmid p00151,304

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aeromicrobium yanjieiAeromicrobium yanjiei

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003065605.1Aeromicrobium chenweiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type87.7575.8775.14

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected