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ASM937223v1

Organism name:
Dickeya oryzae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ZYY5
BioSample:
SAMN11471903
BioProject:
PRJNA533927
Submitter:
Institute of Agricultural Resources and Regional Planning,CAAS
Date:
2019/10/28
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_009372235.1 (latest)
RefSeq assembly accession:
GCF_009372235.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SULL01
Assembly method:
A5-MiSeq v. 20150522
Expected final version:
yes
Genome coverage:
331.0x
Sequencing technology:
Illumina HiSeq

IDs: 5202211 [UID] 15153568 [GenBank] 15173558 [RefSeq]

See Genome Information for Dickeya oryzae

There are 8 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length4,587,177
Total ungapped length4,585,901
Gaps between scaffolds0
Number of scaffolds27
Scaffold N50327,125
Scaffold L504
Number of contigs34
Contig N50263,256
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,587,177274,585,901327,12570

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Dickeya oryzaeDickeya oryzae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000406165.1Dickeya zeaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type94.7483.9684.44

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected