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AAFC_CNas_1.1

Organism name:
Contarinia nasturtii (swede midge)
Isolate:
CC-2019
Sex:
female
BioSample:
SAMN12743477
BioProject:
PRJNA565389
Submitter:
Agriculture Canada
Date:
2019/10/18
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_009176525.2 (latest)
RefSeq assembly accession:
GCF_009176525.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 1 unlocalized scaffold on chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
VYII01
Assembly method:
Supernova v. 2.1.1
Expected final version:
yes
Genome coverage:
57.0x
Sequencing technology:
Illumina HiSeq

IDs: 5341831 [UID] 15462378 [GenBank] 15507798 [RefSeq]

See Genome Information for Contarinia nasturtii

History (Show revision history)

Comment

In November 2019 1115 of the VYII01000000 sequences were suppressed because they were found to be bacterial contaminants, and the assembly was updated to AAFC_CNas_1.1, GCA_009176525.2.

Global statistics

Total sequence length185,885,008
Total ungapped length170,093,678
Gaps between scaffolds0
Number of scaffolds5,545
Scaffold N504,652,070
Scaffold L5013
Number of contigs8,114
Contig N5095,005
Contig L50441
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)5,545

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced185,885,0085,545170,093,6784,652,0702,5690
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