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ASM799379v1

Organism name:
Antarcticibacterium arcticum (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: KCCM:43316
Infraspecific name:
Strain: PAMC 28998
BioSample:
SAMN12144329
BioProject:
PRJNA551306
Submitter:
KOREA POLAR RESEARCH INSTITUTE
Date:
2019/08/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_007993795.1 (latest)
RefSeq assembly accession:
GCF_007993795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT Analysis v. 2.3.0
Expected final version:
yes
Genome coverage:
206.55x
Sequencing technology:
PacBio RSII

IDs: 4336741 [UID] 13191208 [GenBank] 13204248 [RefSeq]

See Genome Information for Antarcticibacterium arcticum

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/22/2023 02:35:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,122
CDSs (total)::3,065
Genes (coding)::3,024
CDSs (with protein)::3,024
Genes (RNA)::57
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::41
CDSs (without protein)::41
Pseudo Genes (ambiguous residues)::0 of 41
Pseudo Genes (frameshifted)::37 of 41
Pseudo Genes (incomplete)::5 of 41
Pseudo Genes (internal stop)::1 of 41
Pseudo Genes (multiple problems)::2 of 41
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,409,178
Total ungapped length3,409,178
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_007993805.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP042476.1=NZ_CP042476.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,409,178

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Antarcticibacterium arcticumAntarcticibacterium arcticum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006159205.1Antarcticibacterium flavumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.3712.229.57

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected