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ASM557743v1

Organism name:
Paenibacillus algicola (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: HB172198
BioSample:
SAMN11382402
BioProject:
PRJNA531793
Submitter:
Chinese Academy of Tropical Agricultural Sciences
Date:
2019/05/22
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_005577435.1 (latest)
RefSeq assembly accession:
GCF_005577435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 23
Expected final version:
yes
Genome coverage:
418.0x
Sequencing technology:
PacBio RSII

IDs: 3003141 [UID] 10290928 [GenBank] 10713028 [RefSeq]

See Genome Information for Paenibacillus algicola

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/17/2024 13:17:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,188
CDSs (total)::4,077
Genes (coding)::4,011
CDSs (with protein)::4,011
Genes (RNA)::111
rRNAs::9, 9, 9 (5S, 16S, 23S)
complete rRNAs::9, 9, 9 (5S, 16S, 23S)
tRNAs::80
ncRNAs::4
Pseudo Genes (total)::66
CDSs (without protein)::66
Pseudo Genes (ambiguous residues)::0 of 66
Pseudo Genes (frameshifted)::29 of 66
Pseudo Genes (incomplete)::48 of 66
Pseudo Genes (internal stop)::18 of 66
Pseudo Genes (multiple problems)::23 of 66
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,475,055
Total ungapped length4,475,055
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_005577465.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP040396.1=NZ_CP040396.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,475,055

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Paenibacillus algicolaPaenibacillus algicola

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_012933385.1Paenibacillus lemnaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type80.9115.3114.94

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected