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ASM528154v1

Organism name:
Epinephelus lanceolatus (giant grouper)
Isolate:
Andai001
Sex:
female
BioSample:
SAMN10786578
BioProject:
PRJNA516312
Submitter:
Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences
Date:
2019/05/13
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_005281545.1 (latest)
RefSeq assembly accession:
GCF_005281545.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
SZWH01
Assembly method:
SOAPdenovo v. 2.0
Expected final version:
yes
Genome coverage:
133.0x
Sequencing technology:
Illumina HiSeq; BGISEQ-500

IDs: 2828621 [UID] 9899128 [GenBank] 18724878 [RefSeq]

See Genome Information for Epinephelus lanceolatus

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Both paired-ended short reads produced by Illumina HiSeq platform and HiC reads produced by BGISEQ-500 platform were used to assemble and link the sequences in the assembly.

Global statistics

Total sequence length1,087,415,941
Total ungapped length1,048,167,319
Gaps between scaffolds0
Number of scaffolds4,201
Scaffold N5046,227,939
Scaffold L5011
Number of contigs22,226
Contig N50159,800
Contig L501,795
Total number of chromosomes and plasmids25
Number of component sequences (WGS or clone)4,201

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_005281755.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM016520.1=NC_046991.10
Chromosome 2CM016521.1=NC_046992.10
Chromosome 3CM016522.1=NC_046993.10
Chromosome 4CM016523.1=NC_046994.10
Chromosome 5CM016524.1=NC_046995.10
Chromosome 6CM016525.1=NC_046996.10
Chromosome 7CM016526.1=NC_046997.10
Chromosome 8CM016527.1=NC_046998.10
Chromosome 9CM016528.1=NC_046999.10
Chromosome 10CM016529.1=NC_047000.10
Chromosome 11CM016530.1=NC_047001.10
Chromosome 12CM016531.1=NC_047002.10
Chromosome 13CM016532.1=NC_047003.10
Chromosome 14CM016533.1=NC_047004.10
Chromosome 15CM016534.1=NC_047005.10
Chromosome 16CM016535.1=NC_047006.10
Chromosome 17CM016536.1=NC_047007.10
Chromosome 18CM016537.1=NC_047008.10
Chromosome 19CM016538.1=NC_047009.10
Chromosome 20CM016539.1=NC_047010.10
Chromosome 21CM016540.1=NC_047011.10
Chromosome 22CM016541.1=NC_047012.10
Chromosome 23CM016542.1=NC_047013.10
Chromosome 24CM016543.1=NC_047014.10
unplacedn/an/an/a4,176

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All1,087,399,3674,2001,048,150,74546,227,93918,0250
Chromosome 157,740,692155,935,08057,740,6928470
Chromosome 252,846,369150,993,35452,846,3698660
Chromosome 352,174,673149,879,67652,174,6731,0520
Chromosome 449,726,094147,940,74849,726,0948200
Chromosome 548,868,446147,315,78548,868,4467550
Chromosome 648,775,047147,556,36148,775,0476230
Chromosome 748,758,432147,566,82248,758,4326060
Chromosome 848,704,810147,108,93848,704,8107790
Chromosome 948,494,139146,717,22248,494,1398330
Chromosome 1046,513,705144,714,05946,513,7058240
Chromosome 1146,227,939144,784,00946,227,9396740
Chromosome 1245,250,767143,520,60945,250,7677830
Chromosome 1344,881,230142,764,23844,881,2308690
Chromosome 1443,379,860142,366,73143,379,8605170
Chromosome 1543,207,221141,850,91443,207,2217000
Chromosome 1642,612,996141,143,91242,612,9967170
Chromosome 1742,493,523140,704,36742,493,5238180
Chromosome 1841,934,532140,827,79141,934,5325660
Chromosome 1940,864,725139,645,75840,864,7255990
Chromosome 2040,427,337138,147,41640,427,3379920
Chromosome 2140,383,474139,044,32640,383,4746340
Chromosome 2238,497,468137,154,37338,497,4685890
Chromosome 2335,479,383134,423,18535,479,3835140
Chromosome 2421,756,198120,745,47521,756,1984620
unplaced17,400,3074,17615,299,5965,7275860
MoleculeTotal
Length
Mitochondrion MT16,574
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