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ASM528020v1

Organism name:
Bacillus yapensis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: XXST-01
BioSample:
SAMN11464894
BioProject:
PRJNA533716
Submitter:
The Third Institute of State Oceanic Administration
Date:
2019/05/10
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_005280205.1 (latest)
RefSeq assembly accession:
GCF_005280205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SUND01
Assembly method:
SPAdes v. 3.8.1
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
Illumina HiSeq

IDs: 2819531 [UID] 9893898 [GenBank] 9894918 [RefSeq]

See Genome Information for Bacillus yapensis

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from JCM 33181
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/26/2019 07:18:23
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,633
CDSs (total)::4,522
Genes (coding)::4,415
CDSs (with protein)::4,415
Genes (RNA)::111
rRNAs::9, 8, 5 (5S, 16S, 23S)
complete rRNAs::8 (5S)
partial rRNAs::1, 8, 5 (5S, 16S, 23S)
tRNAs::84
ncRNAs::5
Pseudo Genes (total)::107
CDSs (without protein)::107
Pseudo Genes (ambiguous residues)::0 of 107
Pseudo Genes (frameshifted)::37 of 107
Pseudo Genes (incomplete)::56 of 107
Pseudo Genes (internal stop)::21 of 107
Pseudo Genes (multiple problems)::7 of 107
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,608,128
Total ungapped length4,608,128
Number of contigs49
Contig N50194,358
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)49

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,608,128494,608,128194,35800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacillus yapensisBacillus yapensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003966255.1Bacillus yapensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003966255.1Bacillus yapensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.00100.00100.00
Best-match type100.00100.00100.00

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna