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ASM525061v1

Organism name:
Pseudomonas rhizoryzae (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: RY24
BioSample:
SAMN11470674
BioProject:
PRJNA533889
Submitter:
Institute of Agricultural Resources and Regional Planning,CAAS
Date:
2019/05/07
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_005250615.1 (latest)
RefSeq assembly accession:
GCF_005250615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SULM01
Assembly method:
CLC NGS Cell v. A5-MiSeq v20150522
Expected final version:
yes
Genome coverage:
187.0x
Sequencing technology:
Illumina HiSeq

IDs: 2804711 [UID] 9864178 [GenBank] 9894018 [RefSeq]

See Genome Information for Pseudomonas rhizoryzae

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length5,346,010
Total ungapped length5,346,010
Number of contigs45
Contig N50368,693
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)45

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,346,010455,346,010368,69300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas rhizoryzaePseudomonas rhizoryzae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_012986195.1Pseudomonas oryzihabitanssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.1978.2082.97

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected