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ASM515558v1

Organism name:
Haloprofundus sp. MHR1 (euryarchaeotes)
Taxonomy check:
OK
Infraspecific name:
Strain: MHR1
BioSample:
SAMN11514334
BioProject:
PRJNA539857
Submitter:
Nankai University
Date:
2019/05/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_005155585.1 (latest)
RefSeq assembly accession:
GCF_005155585.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
PacBio SMRT Link v. 5.0.1
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
PacBio

IDs: 2757361 [UID] 9758698 [GenBank] 9839428 [RefSeq]

See Genome Information for Haloprofundus sp. MHR1

History (Show revision history)

Comment

Bacteria and source DNA available from Dr. Yi Luo, College of Environmental Sciences and Engineering, Nankai University, 38 Tongyan Road, Jinnan, Tianjin, P. R. China 300350
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about ... PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_005155585.1-RS_2024_05_06
Annotation Date::05/06/2024 02:50:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,134
CDSs (total)::3,075
Genes (coding)::3,058
CDSs (with protein)::3,058
Genes (RNA)::59
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::51
ncRNAs::2
Pseudo Genes (total)::17
CDSs (without protein)::17
Pseudo Genes (ambiguous residues)::0 of 17
Pseudo Genes (frameshifted)::5 of 17
Pseudo Genes (incomplete)::13 of 17
Pseudo Genes (internal stop)::1 of 17
Pseudo Genes (multiple problems)::2 of 17
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,051,700
Total ungapped length3,051,700
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_005155635.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP039833.1=NZ_CP039833.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,051,700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Haloprofundus sp. MHR1Haloprofundus sp. MHR1

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003439925.1Haloprofundus halophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type98.6492.5781.34

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna