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ASM468420v1

Organism name:
Candidatus Macondimonas diazotrophica (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: KTK01
BioSample:
SAMN11302943
BioProject:
PRJNA530182
Submitter:
Georgia Institute of Technology
Date:
2019/04/06
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_004684205.1 (latest)
RefSeq assembly accession:
GCF_004684205.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SRIO01
Assembly method:
SPAdes v. August 2017; IDBA-UD v. August 2017
Expected final version:
no
Genome coverage:
90.0x
Sequencing technology:
Illumina MiSeq

IDs: 2514661 [UID] 9166728 [GenBank] 9170568 [RefSeq]

See Genome Information for Candidatus Macondimonas diazotrophica

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Kostas Konstantinidis
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/01/2019 19:50:49
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,797
CDSs (total)::2,746
Genes (coding)::2,724
CDSs (with protein)::2,724
Genes (RNA)::51
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::22
CDSs (without protein)::22
Pseudo Genes (ambiguous residues)::0 of 22
Pseudo Genes (frameshifted)::13 of 22
Pseudo Genes (incomplete)::12 of 22
Pseudo Genes (internal stop)::5 of 22
Pseudo Genes (multiple problems)::6 of 22
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,800,882
Total ungapped length2,800,882
Number of contigs94
Contig N50178,425
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)94

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,800,882942,800,882178,42500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Candidatus Macondimonas diazotrophicaCandidatus Macondimonas diazotrophica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001697225.1Immundisolibacter cernigliaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.271.741.50

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena
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