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ASM455152v1

Organism name:
Vibrio ouci (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: BEI176
BioSample:
SAMN10644111
BioProject:
PRJNA511808
Submitter:
Ocean University of China
Date:
2019/04/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004551525.1 (latest)
RefSeq assembly accession:
GCF_004551525.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SATR01
Assembly method:
SOAPdenovo v. DEC-2018
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina

IDs: 2449121 [UID] 9017078 [GenBank] 9036748 [RefSeq]

See Genome Information for Vibrio ouci

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/08/2019 22:50:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,245
CDSs (total)::5,116
Genes (coding)::4,917
CDSs (with protein)::4,917
Genes (RNA)::129
rRNAs::9, 7, 9 (5S, 16S, 23S)
complete rRNAs::9 (5S)
partial rRNAs::7, 9 (16S, 23S)
tRNAs::99
ncRNAs::5
Pseudo Genes (total)::199
CDSs (without protein)::199
Pseudo Genes (ambiguous residues)::7 of 199
Pseudo Genes (frameshifted)::77 of 199
Pseudo Genes (incomplete)::86 of 199
Pseudo Genes (internal stop)::69 of 199
Pseudo Genes (multiple problems)::33 of 199
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,483,755
Total ungapped length5,483,755
Number of contigs449
Contig N50118,840
Contig L5016
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)449

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,483,7554495,483,755118,84000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Vibrio ouciVibrio ouci

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000176235.1Vibrio orientalistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.3873.3885.65

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected