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ASM436681v1

Organism name:
Aminivibrio pyruvatiphilus (bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:25964
Infraspecific name:
Strain: DSM 25964
BioSample:
SAMN08775544
BioProject:
PRJNA442671
Submitter:
DOE Joint Genome Institute
Date:
2019/03/22
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004366815.1 (latest)
RefSeq assembly accession:
GCF_004366815.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SORI01
Assembly method:
SPAdes v. 3.10.1
Expected final version:
no
Genome coverage:
266.0x
Sequencing technology:
Illumina HiSeq

IDs: 2354331 [UID] 8774568 [GenBank] 8830748 [RefSeq]

See Genome Information for Aminivibrio pyruvatiphilus

History (Show revision history)

Comment

Global statistics

Total sequence length3,347,494
Total ungapped length3,346,867
Gaps between scaffolds0
Number of scaffolds62
Scaffold N50132,230
Scaffold L508
Number of contigs67
Contig N50124,757
Contig L508
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)62

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,347,494623,346,867132,23050

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Aminivibrio pyruvatiphilusAminivibrio pyruvatiphilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000526375.1Aminiphilus circumscriptustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type81.740.700.72

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected