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ASM435803v1

Organism name:
Algoriphagus aquimaris (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: JCM:33187
Infraspecific name:
Strain: F21
BioSample:
SAMN11098717
BioProject:
PRJNA526423
Submitter:
Kyonggi University
Date:
2019/03/19
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004358035.1 (latest)
RefSeq assembly accession:
GCF_004358035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SMUW01
Assembly method:
HGAP v. 2.0
Expected final version:
yes
Genome coverage:
30.0x
Sequencing technology:
PacBio RSII

IDs: 2349921 [UID] 8762138 [GenBank] 8767078 [RefSeq]

See Genome Information for Algoriphagus aquimaris

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from JCM 33187

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/14/2019 16:32:37
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.8
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,793
CDSs (total)::3,749
Genes (coding)::3,726
CDSs (with protein)::3,726
Genes (RNA)::44
rRNAs::2, 1 (16S, 23S)
partial rRNAs::2, 1 (16S, 23S)
tRNAs::38
ncRNAs::3
Pseudo Genes (total)::23
CDSs (without protein)::23
Pseudo Genes (ambiguous residues)::2 of 23
Pseudo Genes (frameshifted)::6 of 23
Pseudo Genes (incomplete)::11 of 23
Pseudo Genes (internal stop)::5 of 23
Pseudo Genes (multiple problems)::1 of 23
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,338,560
Total ungapped length4,338,540
Gaps between scaffolds0
Number of scaffolds37
Scaffold N50326,923
Scaffold L505
Number of contigs39
Contig N50326,923
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)37

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,338,560374,338,540326,92320

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Algoriphagus aquimarisAlgoriphagus aquimaris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002807035.1Algoriphagus formosustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.7092.2389.07

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected