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ASM419593v1

Organism name:
Streptomyces albidoflavus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CR33
BioSample:
SAMN08238382
BioProject:
PRJNA427449
Submitter:
Institute of Microbiology, Chinese Academy of Sciences
Date:
2019/02/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_004195935.1 (latest)
RefSeq assembly accession:
GCF_004195935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PKNX01
Assembly method:
SOAPdenovo v. DEC-2015
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina HiSeq

IDs: 2276911 [UID] 8520728 [GenBank] 8538698 [RefSeq]

See Genome Information for Streptomyces albidoflavus

There are 63 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/27/2017 23:53:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,282
CDS (total)::6,203
Genes (coding)::6,065
CDS (coding)::6,065
Genes (RNA)::79
rRNAs::5, 1, 4 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::3, 4 (5S, 23S)
tRNAs::66
ncRNAs::3
Pseudo Genes (total)::138
Pseudo Genes (ambiguous residues)::0 of 138
Pseudo Genes (frameshifted)::63 of 138
Pseudo Genes (incomplete)::92 of 138
Pseudo Genes (internal stop)::15 of 138
Pseudo Genes (multiple problems)::31 of 138
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,157,271
Total ungapped length7,157,271
Number of contigs61
Contig N50352,542
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)61

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,157,271617,157,271352,54200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces albidoflavusStreptomyces albidoflavus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000719955.1Streptomyces albidoflavustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000719955.1Streptomyces albidoflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6791.6892.61
Best-match type98.6791.6892.61

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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