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ASM419583v1

Organism name:
Streptomyces albidoflavus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FXJ8.011
BioSample:
SAMN08225705
BioProject:
PRJNA427237
Submitter:
Institute of Microbiology, Chinese Academy of Sciences
Date:
2019/02/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_004195835.1 (latest)
RefSeq assembly accession:
GCF_004195835.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PKLT01
Assembly method:
SOAPdenovo v. Dec-2015
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina HiSeq

IDs: 2276861 [UID] 8520628 [GenBank] 8538618 [RefSeq]

See Genome Information for Streptomyces albidoflavus

There are 57 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/26/2017 20:58:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,322
CDS (total)::6,244
Genes (coding)::6,074
CDS (coding)::6,074
Genes (RNA)::78
rRNAs::1, 2, 4 (5S, 16S, 23S)
complete rRNAs::1 (5S)
partial rRNAs::2, 4 (16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::170
Pseudo Genes (ambiguous residues)::0 of 170
Pseudo Genes (frameshifted)::86 of 170
Pseudo Genes (incomplete)::105 of 170
Pseudo Genes (internal stop)::15 of 170
Pseudo Genes (multiple problems)::32 of 170
CRISPR Arrays::6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,188,121
Total ungapped length7,188,121
Number of contigs48
Contig N50383,364
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)48

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,188,121487,188,121383,36400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces albidoflavusStreptomyces albidoflavus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004195735.1Streptomyces albidoflavustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004195735.1Streptomyces albidoflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1691.8694.75
Best-match type99.1691.8694.75

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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