U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM419574v1

Organism name:
Streptomyces albidoflavus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 100770
BioSample:
SAMN08225691
BioProject:
PRJNA427237
Submitter:
Institute of Microbiology, Chinese Academy of Sciences
Date:
2019/02/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from synonym type material
GenBank assembly accession:
GCA_004195745.1 (latest)
RefSeq assembly accession:
GCF_004195745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
PKLL01
Assembly method:
SOAPdenovo v. DEC-2015
Expected final version:
yes
Genome coverage:
150.0x
Sequencing technology:
Illumina HiSeq

IDs: 2276821 [UID] 8520548 [GenBank] 8538538 [RefSeq]

See Genome Information for Streptomyces albidoflavus

There are 57 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/26/2017 22:14:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,231
CDS (total)::6,154
Genes (coding)::6,024
CDS (coding)::6,024
Genes (RNA)::77
rRNAs::1, 1, 4 (5S, 16S, 23S)
complete rRNAs::1, 1 (5S, 16S)
partial rRNAs::4 (23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::130
Pseudo Genes (ambiguous residues)::0 of 130
Pseudo Genes (frameshifted)::57 of 130
Pseudo Genes (incomplete)::79 of 130
Pseudo Genes (internal stop)::20 of 130
Pseudo Genes (multiple problems)::25 of 130
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,157,307
Total ungapped length7,157,307
Number of contigs41
Contig N50334,066
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)41

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,157,307417,157,307334,06600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces albidoflavusStreptomyces albidoflavus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004195735.1Streptomyces albidoflavustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004195735.1Streptomyces albidoflavustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.5896.2598.85
Best-match type99.5896.2598.85

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
Support Center