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ASM412527v1

Organism name:
Streptomyces lydicus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: SW_ACT1
BioSample:
SAMN10234048
BioProject:
PRJNA495907
Submitter:
University of East Anglia
Date:
2019/01/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_004125275.1 (latest)
RefSeq assembly accession:
GCF_004125275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RDTC01
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
75.24x
Sequencing technology:
PacBio

IDs: 2225421 [UID] 8380768 [GenBank] 8415868 [RefSeq]

See Genome Information for Streptomyces lydicus

There are 10 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Professor Matthew Hutchings, School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ

Global statistics

Total sequence length9,139,876
Total ungapped length9,139,876
Number of contigs2
Contig N508,553,423
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,139,87629,139,8768,553,42300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces lydicusStreptomyces lydicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004125245.1Streptomyces lydicussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009811595.1Streptomyces libanitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type88.4553.7161.86
Best-match type96.7584.2884.18

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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