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ASM412526v1

Organism name:
Streptomyces lydicus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: ATCC 31975
BioSample:
SAMN10236174
BioProject:
PRJNA496018
Submitter:
University of East Anglia
Date:
2019/01/31
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_004125265.1 (latest)
RefSeq assembly accession:
GCF_004125265.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RDTE01
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
109.54x
Sequencing technology:
PacBio

IDs: 2225411 [UID] 8380748 [GenBank] 8426558 [RefSeq]

See Genome Information for Streptomyces lydicus

There are 11 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Professor Matthew Hutchings, School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TJ

Global statistics

Total sequence length9,244,118
Total ungapped length9,244,118
Number of contigs3
Contig N508,610,875
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced9,244,11839,244,1188,610,87500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces lydicusStreptomyces lydicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004125245.1Streptomyces lydicussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002154415.1Streptomyces angustmyceticustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type88.4748.7556.79
Best-match type91.8856.5270.05

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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