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ASM412273v1

Organism name:
Streptomyces sioyaensis (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 40032
BioSample:
SAMN10784938
BioProject:
PRJNA516206
Submitter:
University of Glasgow
Date:
2019/01/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_004122735.1 (latest)
RefSeq assembly accession:
GCF_004122735.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
SDIF01
Assembly method:
SPAdes v. 3.9
Expected final version:
yes
Genome coverage:
511.59x
Sequencing technology:
Illumina HiSeq

IDs: 2224201 [UID] 8378028 [GenBank] 8415628 [RefSeq]

See Genome Information for Streptomyces sioyaensis

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSMZ), Germany
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/25/2019 01:56:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,787
CDSs (total)::6,709
Genes (coding)::6,431
CDSs (with protein)::6,431
Genes (RNA)::78
rRNAs::6, 1, 3 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::4, 2 (5S, 23S)
tRNAs::65
ncRNAs::3
Pseudo Genes (total)::278
CDSs (without protein)::278
Pseudo Genes (ambiguous residues)::0 of 278
Pseudo Genes (frameshifted)::67 of 278
Pseudo Genes (incomplete)::232 of 278
Pseudo Genes (internal stop)::12 of 278
Pseudo Genes (multiple problems)::33 of 278
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,847,945
Total ungapped length7,847,945
Number of contigs289
Contig N5054,690
Contig L5041
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)289

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,847,9452897,847,94554,69000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sioyaensisStreptomyces sioyaensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014646275.1Streptomyces kronopolitistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.6975.0375.17

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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