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ASM399437v1

Organism name:
Streptomyces lydicus (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: WYEC 108
BioSample:
SAMN08971293
BioProject:
PRJNA451474
Submitter:
Brown University
Date:
2019/01/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_003994375.1 (latest)
RefSeq assembly accession:
GCF_003994375.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 4
Expected final version:
yes
Genome coverage:
65.0x
Sequencing technology:
PacBio

IDs: 2195091 [UID] 8190468 [GenBank] 8194248 [RefSeq]

See Genome Information for Streptomyces lydicus

There are 10 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Sello Lab.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::07/15/2022 05:35:06
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,920
CDSs (total)::7,828
Genes (coding)::7,510
CDSs (with protein)::7,510
Genes (RNA)::92
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::318
CDSs (without protein)::318
Pseudo Genes (ambiguous residues)::0 of 318
Pseudo Genes (frameshifted)::99 of 318
Pseudo Genes (incomplete)::274 of 318
Pseudo Genes (internal stop)::17 of 318
Pseudo Genes (multiple problems)::67 of 318
##Genome-Annotation-Data-END##

Global statistics

Total sequence length9,125,666
Total ungapped length9,125,666
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_003994385.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP029042.1=NZ_CP029042.1

Assembly statistics

MoleculeTotal
Length
Chromosome 9,125,666

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces lydicusStreptomyces lydicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004125245.1Streptomyces lydicussuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009811595.1Streptomyces libanitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type88.4553.7961.86
Best-match type96.7584.4284.18

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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