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ASM398974v1

Organism name:
Legionella septentrionalis (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: km711
BioSample:
SAMN10610692
BioProject:
PRJNA510538
Submitter:
kingMed Center for Clinical Laborary
Date:
2019/01/01
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_003989745.1 (latest)
RefSeq assembly accession:
GCF_003989745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RZGS01
Assembly method:
SPAdes v. v3.12.0
Expected final version:
yes
Genome coverage:
370x
Sequencing technology:
Illumina NextSeq

IDs: 2192371 [UID] 8173388 [GenBank] 8192608 [RefSeq]

See Genome Information for Legionella septentrionalis

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::12/26/2018 23:29:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,460
CDSs (total)::2,410
Genes (coding)::2,338
CDSs (with protein)::2,338
Genes (RNA)::50
rRNAs::3, 2, 3 (5S, 16S, 23S)
complete rRNAs::2 (5S)
partial rRNAs::1, 2, 3 (5S, 16S, 23S)
tRNAs::39
ncRNAs::3
Pseudo Genes (total)::72
CDSs (without protein)::72
Pseudo Genes (ambiguous residues)::0 of 72
Pseudo Genes (frameshifted)::45 of 72
Pseudo Genes (incomplete)::34 of 72
Pseudo Genes (internal stop)::8 of 72
Pseudo Genes (multiple problems)::14 of 72
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,660,547
Total ungapped length2,660,547
Number of contigs85
Contig N5059,014
Contig L5013
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)85

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,660,547852,660,54759,01400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Legionella septentrionalisLegionella septentrionalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000770585.1Legionella norrlandicatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.992.902.51

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected
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