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ASM398492v1

Organism name:
Streptomyces sp. WAC08401 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: WAC08401
BioSample:
SAMN10396523
BioProject:
PRJNA504665
Submitter:
McMaster University
Date:
2018/12/14
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003984925.1 (latest)
RefSeq assembly accession:
GCF_003984925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
RPRV01
Assembly method:
SPAdes v. 3.11.1
Expected final version:
yes
Genome coverage:
123.63x
Sequencing technology:
Illumina HiSeq

IDs: 2190351 [UID] 8167818 [GenBank] 8213658 [RefSeq]

See Genome Information for Streptomyces sp. WAC08401

History (Show revision history)

Comment

Bacteria and source DNA available from Gerard Wright wrightge@mcmaster.ca
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::11/21/2018 05:55:59
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,379
CDSs (total)::7,301
Genes (coding)::7,062
CDSs (with protein)::7,062
Genes (RNA)::78
rRNAs::5, 1, 1 (5S, 16S, 23S)
complete rRNAs::5, 1, 1 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::239
CDSs (without protein)::239
Pseudo Genes (ambiguous residues)::0 of 239
Pseudo Genes (frameshifted)::97 of 239
Pseudo Genes (incomplete)::169 of 239
Pseudo Genes (internal stop)::28 of 239
Pseudo Genes (multiple problems)::48 of 239
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,211,538
Total ungapped length8,211,538
Number of contigs64
Contig N50374,052
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)64

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,211,538648,211,538374,05200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces sp. WAC08401Streptomyces sp. WAC08401

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014650215.1Streptomyces vinaceusdrappussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.0393.3490.58

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna
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